Gene Coch_1533 details

Gene Information

• Locus tag: Coch_1533
• ID: 8367973
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 1820895
• End bp: 1821542
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 644983968
• Product: pseudouridine synthase
• Protein accession: YP_003141639
• Protein GI: 256820360
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0564] Pseudouridylate synthases, 23S RNA-specific

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTTTACG AAGACAATCA CGTTATCGCC GTAAACAAGC GAGTAGGCGA CATAGTTCAG 
GGCGACAAGA CGGGGGACAC TCCGCTTAGC GATATTGTCA AACAATACCT TAAACAAAAA 
TATAACAAAC CTGGGGAGGT ATTCCTTGGA GTGGTACATC GCTTAGATCG CCCTACTACG 
GGAGTGGTGC TCTTTGCCAA AACCTCTAAA GCTCTCGCAC GCCTCAATAC GATGTTTGCT 
AATAAACAGG AAGTACAGAA AACCTATTGG GCGTTGGTAG ATGCAAAACC TCCTGTCGAG 
GAAGATACGC TTACCCATTG GTTAGTGCGT AATGAAAAAC AAAACAAGTC AGTAGCATAT 
AATAAAGAAA TGCAGCATAG CAAGAAAGCG GTATTGCATT ATAAGTTATT GAAATCGTAT 
GAACGTTATT ACCTATTAGA AATCGACCTC ATCACGGGGC GCCATCACCA GATAAGAGCG 
CAATTAGCTG CCATAGAATT GCACATCAAA GGAGACCTGA AGTACGGTGC CAAACGTTCC 
AATCCCGATG GAGGTATCTG TCTTCACGCT TATAGCCTGA GCTTTGTTCA CCCTGTAAAG 
AAAGAGCCTA CTAAGATTAT TGCAGAAGCC CCTTTCTCTT TCTTGTAG 

 

Protein sequence

MLYEDNHVIA VNKRVGDIVQ GDKTGDTPLS DIVKQYLKQK YNKPGEVFLG VVHRLDRPTT 
GVVLFAKTSK ALARLNTMFA NKQEVQKTYW ALVDAKPPVE EDTLTHWLVR NEKQNKSVAY 
NKEMQHSKKA VLHYKLLKSY ERYYLLEIDL ITGRHHQIRA QLAAIELHIK GDLKYGAKRS 
NPDGGICLHA YSLSFVHPVK KEPTKIIAEA PFSFL