Gene Coch_1477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1477 
Symbol 
ID8367914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand- 
Start bp1750668 
End bp1751351 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content38% 
IMG OID644983910 
ProductUroporphyrinogen III synthase HEM4 
Protein accessionYP_003141584 
Protein GI256820305 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1587] Uroporphyrinogen-III synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACCA TCGTCTCTAC AAAAGTCTTA TCCCAAGAAC AGAAAGCAAT CCTTTCAGTT 
CTTCCTATAC ACCTCATCGA ACACAACTTT ATCACCGTAA GCCCTATAAC AATGAGCCTC 
ACACCGCCCT ACGACTTGCT CATTGTTACC AGTCAAAATG CAGTGAAGAG CCTATCAAGA 
CACCCTTTGG CAACTACCTT AAAAGAGACT CCTGTTCTTT GTGTAGGTGA GCAAACTCAA 
CAACTACTCA CTCAAAACGG TTTTAATGTA TTGCATTTTG CCCACTATGC CTCTGATTTG 
GTTCAACATT TACAGCAAAA CTTAGCTTCC TTAAAAAAAC TTACCTCTAT CGCATTCTTT 
GCAGGTACTC AACGCCTTAA TACCCTCCCC AACTTCTTTG TTGAAAACAA TTTAAAAGTA 
AAAGAAATCA CCGCTTATAA AACTGAATAT ACTCCTATTG AGATAAAAGA GAACGCAAGT 
GCTATTCTCT TTTACAGTCC GTCGGGAGTA GAAAGCTACT GCTCGTGCAA CACCCTCACA 
GCTGAACAAC AAATATTTTG TATAGGTAAA ACTACCGCCG AAGCCGTAAA AAACAGATTT 
AAAAACCAAA CTAAAAATAT AATCCTCTCT CCTATTCCTA CTGTAAAATC TCTTTTAGAA 
ATACTGTCTA TAAAGCTAAA ATAA
 
Protein sequence
MKTIVSTKVL SQEQKAILSV LPIHLIEHNF ITVSPITMSL TPPYDLLIVT SQNAVKSLSR 
HPLATTLKET PVLCVGEQTQ QLLTQNGFNV LHFAHYASDL VQHLQQNLAS LKKLTSIAFF 
AGTQRLNTLP NFFVENNLKV KEITAYKTEY TPIEIKENAS AILFYSPSGV ESYCSCNTLT 
AEQQIFCIGK TTAEAVKNRF KNQTKNIILS PIPTVKSLLE ILSIKLK