Gene Coch_1162 details

Gene Information

• Locus tag: Coch_1162
• Symbol: rplF
• ID: 8367584
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 1378037
• End bp: 1378579
• Gene Length: 543 bp
• Protein Length: 180 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 644983588
• Product: 50S ribosomal protein L6
• Protein accession: YP_003141276
• Protein GI: 256819997
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00000404659
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAGAA TAGGTAAAGC ACCCATCAAT ATTCCCGCAG GCGTTACCGT TACTATCAAA 
GATAACGTTG TAACCGTAAA GGGGAAATTA GGCGAATTAA CCCAAGAGGT TAAAGACATT 
GCTGTAAAGC AAGAAGATGG ACATTTAGTG TTTGAAACTA AAGATACCAC TAAAGACCAA 
AACGCTAAAC ACGGCCTATA CCGTGCCTTG GTAAACAATA TGGTCGTAGG TGTTTCTGAA 
GGATTCACTA AAGAATTAGA GTTAGTAGGG GTTGGATACC GTGCAGCTAA CCAAGGTCAA 
AAGTTAGACT TAGCCCTCGG TTTCTCTCAC AACATCATTC TCGAATTGCC AAAAGAAATT 
AAACTCGAAA CAATCAACGA GAAAGGTAAA AACCCTATCA TTAAATTAAC TTCTCACGAC 
AAACAACTAC TCGGGCAAGT AGCGGCTAAA ATCCGTAGCT TCCGCAAACC TGAACCTTAC 
AAAGGTAAAG GTGTCAAATT CGTAGGCGAA GTGTTGAGAA GAAAAGCAGG TAAATCAGCT 
TAA 

 

Protein sequence

MSRIGKAPIN IPAGVTVTIK DNVVTVKGKL GELTQEVKDI AVKQEDGHLV FETKDTTKDQ 
NAKHGLYRAL VNNMVVGVSE GFTKELELVG VGYRAANQGQ KLDLALGFSH NIILELPKEI 
KLETINEKGK NPIIKLTSHD KQLLGQVAAK IRSFRKPEPY KGKGVKFVGE VLRRKAGKSA