Gene Coch_1074 details

Gene Information

• Locus tag: Coch_1074
• ID: 8367496
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: -
• Start bp: 1272049
• End bp: 1275393
• Gene Length: 3345 bp
• Protein Length: 1114 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 644983502
• Product: TonB-dependent receptor plug
• Protein accession: YP_003141190
• Protein GI: 256819911

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGAAA AATTGATGTA TGCACTGTTA TGCACTGTGC TGTTCTTTGG TGTTGCCTTT 
GCCCAAGAAC GCACCGTAAC AGGGGTAGTA AAAGATGAAG CAGGCACTCC ACTACCCGGT 
GCCTCAGTAC TGGTAAAAGG TACTTCTCAC GGGGTCGCCA CCGATTTCGA TGGCAAATAC 
TCCATTAAAG TACCCAATGA CAGCGCCGTA TTAGTCTTTT CTCAGCTGGG GAGTGCCTCA 
GTAGAGAAAG TAGTAGGTAC TGCCAAAGTG ATTAACGTTG TCCTTAAAGA GAACGTAACT 
GAACTTAAAG GGGTAGTCGT TACTGGTTAC CAAGAGTTCG ACCGTTCTAA ATTTACAGGT 
AATGCTCAAA CCCTCAAAGC CGACAATATC AAAATGGACG GCGTAGTCGA TGTAGGTCGT 
ATGATCGAAG GTCGTGCCGC AGGGGTAAAC GTGCAGAACA TCTCTGGTAC TTTTGGTACT 
TCACCTAAAA TTACCATTCG CGGGGGCTCA TCTATCTTCG GCGATACCAA ACCGCTATGG 
GTGGTCGATG GTGCCGTACA AGAAGAGGTA GTAAACCTTA GCTTCGAGCA ACTTGCTTCG 
GGTGATGCTT CTACTCTGGT AAGCTCGGCT ATCTCTGGTA TCAATGCCAA CGATATTGAG 
AGTATCGAAA TCCTCAAAGA CGCCTCAGCC CTTTCTCTTT ACGGAGCACG CGCCCTGAAC 
GGTGCCGTGA TTATCACTAC CAAAAGTGGT AAGAAAAACG TAAAAACACA GATAAACTAT 
CAATTAGAAG AGTCCGTGCG TATGATTCCT AACTATAATC AGTACGACAT TATGAACTCT 
CAAGAAACAA TGGACGTATA TCAAGAGTTG GAACGCAAAG GCTACTTCTC GCTTTCTTCT 
CATACCCAAG CGCGTTACGG TGGGGCTTAC AATATAATGT ATCGCGCTAT CGATACCTTT 
AATCCCGCTA CAGGCACTTT CTTACTCGAA AATACCGATG CAGCACGGGT TGCTTTCTTG 
CGCAAATATG AATACGCCAA TACTAATTGG TTTAAAACCC TCTTCCGTCC GTCGCTCACT 
CAAAACCATA CGGTGAGCCT TTCAGGTGGG GGTGAAAATG CAACGGTGTA TGGTTCAGTA 
GGTTTCTTTG TAGACCCCGG TTGGACAATT GCCGACCGTA TACACCGCGT AACCGGTAAC 
CTCAAAACCA CCTATACGCT TTCACCTAGC GTAAAGATAG GAGTGCTTAC ACAAGGCTCT 
ATTCGTACCC AAAAAGCTCC TGGTACTTAT AGCCGTGCTG CTAATGCCGT AACAGGAAGT 
TATGAACGTG ATTTTGATAT CAACCCTTTT AGCTATGCGC TCAACACCAC TCGTGCTTTG 
CGCCCTTATG GCGATGATGG TAAGTACGAG TTTTACCGTT ATAACTATGC TCCTATGAAT 
ATCTTGCACG AGCTCGCTAA TAACTATATG GATTTGAACG TGCTTGAGTA TAAAATTCAG 
GGCGACTTAG AAGTAAAACT CGCCAAAGGA TTGAAGTATA ATTTCCTTGG TTCTGTACGC 
CACGTAAAGA GTTCAAACGA GCACTCTATG AGAGAAGATT CTAACGTAGC AGGGGCTTAC 
CGCGCCAATC AGACTACTGT TGTAACCAAA GCTAATCCTT TCTTATTTAC TGATCCTGCC 
GACCCTGATG CCCTTCCTCA AGTAGCATTG CCTAATGGAG GTATATACAA ACGCACTGAA 
AACAACTTGC AAAGTTATTA CTTCCGCAAT GCCTTAGAGT ACAAACGCTT GTTTAAAGAC 
GTACACGACC TAAAAGTATT CTTAGGACAA GAGTATCGCC ATACCGACCG CGATAACTCT 
TTCTTCAACG GATATGGCTA TCAGTTTGCA CGTGGAGGAA CCGCCTTTAC TGATTATCGC 
ATTATTCAAA AAGCGATACA AGAAAATACT CCTTATTTTG GCAAATCATA CACCAAAGAA 
CGTGGTATAG CTTTCTTCTT GCAAGGTACC TATACCTATG ATAACCGCTA TGTATTTGCT 
GGCACACTGA ACTATGAAGG TTCTAACCAA TTAGGGCGTA GTCGTTCTGC TCGCTGGTTA 
CCTACTTGGA ATGCGAGTGC TCGTTGGAAC GCTTCCAACG AGAAATTCCT CGAAGATAAT 
AACACTATCT CTAACCTTGC TTTCCGTCTT AGCTACGGAC TTATCGCTGG TTTAGGAGCT 
GCCAGCAACG CTTTGGCTAT CTTTAAAAAC GAAGTGGCTA ACCGTTACAA CCTTAGTGAT 
AGAGAAAGTA TGATTACTAT TCAGTCCCTA CAAAATAGTG AACTCACTTG GGAAAAAGTA 
TACGAAACCA ACGTAGGTAT AGAACTCGGC TTGTTTAAAA ACCGTATCAA CTTGTCATTA 
GACCTTTATC AAAAGAACTC TAAAGACCTA ATTGACTATG TTCGCACCTC AGGTATTGGT 
GGTGAAATTA TCAAATTAGC CAACAATGCC ACAATGGTAA CAAAAGGGAT TGAACTCGCT 
TTGGATACTA AAAATGTCAA AACTGATGAT TTCAGCTGGA ATACAGGTAT CAATTTCGCT 
TATTTCAACC AAGAAATTAC AAGCCTTCTA TATAAGCCTA ATGTATTTAA CTTAGTGCGC 
GAAGTAGGAG GAAATGTAGT AGGAGGTGCC CGCAACACTT TGTATTCTTA TGATTTCAGA 
GGGTTAAATG ATAAAGGTCT CCCTGTGTTT AACTTGCGCA ATGGTAGTAC CGATTATGCA 
GATATTGATT TCCAAAACCG TCAAGATATC CTTTCTTATC TCAAAAAAGA AGGAGCGGTA 
GAACCTAACC TCACCGCTGG ACTTTCCAAT ACTTTCAAAT ATAAAAATTG GGAATTTAGC 
TTTTTGATTA CGGCTTCAGC TGGTAACAAA ATACGCAAAG CAGACCAATA TACTGTAGAT 
TACAACGACC TCAGTGTATT CCCTAAGGAA ATGAAAAACC GATGGGTAAG AACAGGTGAC 
GAAAAGATAA CTAATATCCC TTCTATTCCT TCTAAATTCA CTCTGAATGA GGTGGGAGAA 
GATACTTTGC GTCGCGTGTA CAATGCCTAC AACCATTCTA CTGCCCGTGT AGTAGATGGC 
TCTTTCATTC GTATGAAAAG TATGAGTCTT TCTTATACTT TTGCCAAAGA CGTATTGGAT 
GCCTTGCACG TAAACAATCT TACCTTGCGC TTACAAGCCA CCAATCCGTT CTTGATTTAT 
GCCCATAAAG ACCTCAACGG GCAAGACCCC GAGTTCTTCC GCACTGGTGG GGTTGCCTAT 
CCTGTAAGTG CTCAATATAC ATTTACTATC AATTTAGGAA TCTAA 

 

Protein sequence

MKEKLMYALL CTVLFFGVAF AQERTVTGVV KDEAGTPLPG ASVLVKGTSH GVATDFDGKY 
SIKVPNDSAV LVFSQLGSAS VEKVVGTAKV INVVLKENVT ELKGVVVTGY QEFDRSKFTG 
NAQTLKADNI KMDGVVDVGR MIEGRAAGVN VQNISGTFGT SPKITIRGGS SIFGDTKPLW 
VVDGAVQEEV VNLSFEQLAS GDASTLVSSA ISGINANDIE SIEILKDASA LSLYGARALN 
GAVIITTKSG KKNVKTQINY QLEESVRMIP NYNQYDIMNS QETMDVYQEL ERKGYFSLSS 
HTQARYGGAY NIMYRAIDTF NPATGTFLLE NTDAARVAFL RKYEYANTNW FKTLFRPSLT 
QNHTVSLSGG GENATVYGSV GFFVDPGWTI ADRIHRVTGN LKTTYTLSPS VKIGVLTQGS 
IRTQKAPGTY SRAANAVTGS YERDFDINPF SYALNTTRAL RPYGDDGKYE FYRYNYAPMN 
ILHELANNYM DLNVLEYKIQ GDLEVKLAKG LKYNFLGSVR HVKSSNEHSM REDSNVAGAY 
RANQTTVVTK ANPFLFTDPA DPDALPQVAL PNGGIYKRTE NNLQSYYFRN ALEYKRLFKD 
VHDLKVFLGQ EYRHTDRDNS FFNGYGYQFA RGGTAFTDYR IIQKAIQENT PYFGKSYTKE 
RGIAFFLQGT YTYDNRYVFA GTLNYEGSNQ LGRSRSARWL PTWNASARWN ASNEKFLEDN 
NTISNLAFRL SYGLIAGLGA ASNALAIFKN EVANRYNLSD RESMITIQSL QNSELTWEKV 
YETNVGIELG LFKNRINLSL DLYQKNSKDL IDYVRTSGIG GEIIKLANNA TMVTKGIELA 
LDTKNVKTDD FSWNTGINFA YFNQEITSLL YKPNVFNLVR EVGGNVVGGA RNTLYSYDFR 
GLNDKGLPVF NLRNGSTDYA DIDFQNRQDI LSYLKKEGAV EPNLTAGLSN TFKYKNWEFS 
FLITASAGNK IRKADQYTVD YNDLSVFPKE MKNRWVRTGD EKITNIPSIP SKFTLNEVGE 
DTLRRVYNAY NHSTARVVDG SFIRMKSMSL SYTFAKDVLD ALHVNNLTLR LQATNPFLIY 
AHKDLNGQDP EFFRTGGVAY PVSAQYTFTI NLGI