Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0537 |
Symbol | |
ID | 8366949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 670741 |
End bp | 673815 |
Gene Length | 3075 bp |
Protein Length | 1024 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644982960 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003140657 |
Protein GI | 256819378 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGATTAA ACAAAGTATC TTTCGCACTA TTTTTAATAC TAATAGTGCA AGGCTTCTCG TGGGCGCAGG AACGAGAAGT GACAGGAACA GTACGCGATG CTAGTGGAAC CGAAATGATG GGCGTAGCTG TAGTAGTAAA AGGAGAACAA CACGGTGTTC AAACCGACTT TAATGGTCGT TATAGCATCA AGGTTGCTCC AGGTAAGACC TTGGAGTTCT CATTCTTAGG AATGAAAACC CAAAATCACA AAGTAGGTCC TTCAGGTCGC ATTGATGTAG TAATGCAAGA AGAAGCCCAA GTGATTGATG AGGTAGTAGT TTTGGGTGTT GTTAAAAAGA AAGCAGCCGA ATCCACAGGG AATACTGTAC AGTTATCAAG TAAAGATATA AGTACACCTT CGGCTATTTC TGTAGACCAA GCTCTGCAAG GGAAAACTCC AGGAGTGGTA ATTAACGCTG CTTCAGGAAC ACCAGGAGCA GAACAGACCG TGATGATTCG CGGGGTAGGC TCTATGAATA GTAGCAATAA ACCTCTTTAT GTGATAGATG GTGTGCCAGT AATCACAGAA AACTTAACAG AGGATAAAAA TACAGCTTCT TCAATGTCAA CCCTTGCAAG TATTAATAAT GAAGATATAG AAACCCTAAC AGTGCTCAAA GATGCCGCCG CTACGGCTCT TTATGGAGCG AGAGGCTCCA ATGGGGTTAT TGTTATTACA ACCAAGTCTG GTAAAAGAGG AAAAACGAGG TTTAATGTAA ACACCTCAGT GGGTTTCCAA AACGATGCAT ATTATAAAAG GTCTCCTCTT ACGGGTGACC AACGCTATCA TTTGTTAAAG CAAGGTTTAG CAAACCAGTT TGCAAGTAGA GGTGTAACTT ACGACACCGC AATTGATTTT GCCCAGACCA ATGGTTTGAG AATCAACGGG GCAGAAAACT TTAATAGTGC ATTAAATAAT AACAATTGGT CAGAACTTAT AAAAAACAAA AATGCTGTAA TGACCTCTGC CGATATATCA GCCTCTGGAG GAGATGAAAA AGGAACTTAT TATGTATCGT TGGGATATAA CAGAACAGAA TCTACTGTAA AAACATCCGA CCCTTTTAAA CGTGTATCTG GATTGATAAG AATTAACAGA GATTTGAATG ATAAATTGAA GTTAGAGGCT TCAGTAAATG GCTCTTGGGT ATCTCAAAAT CCTATTGCTG AGCAATCAGC TTATTTTACA AATCCTTATG TGACAAAAAT ATTGATGTCT CCTTGGGTAA GTCCTTATAA TGCTGATGGG TCCTATAATG TTACCACATT TAATGACTAC ACAAGTTTGT ATAATTATTT GTATATAAAA GACCACGATA TATCAAAGAA CAATACCCTA AGAGGGTTGA TAAACTTTAA AGTAGATTAC GAACTGCTTA AAAATTTGGT ATTCTCTACT CGTGCAAATG TAGATTACAT TTCATCAGAT TATAAAGACT ATCAAAACAG GATACATAGT AATGCTTCTA AAAATAACGG GTCTTCACAG CGTATAATGG CTAACCACAC TACTTGGGTA TATCAAAACA CATTAACATA CAATTTTAAT GTGGCCGAAA AGCATAAATT TGGTGTAACA GCACTTTATG AATATCAAAA GTACAAAAAA GATTATTTAT ATGGTTATGG TACGAATATA GCTGTTGATG GTTTAACCAA TCTTGCTTCT GTAACAAAAC AAAAAACAAT ATCTTCTACT TTCGAAGATT GGGCGAATGT ATCGTTGTTA GGAATGTTTA ACTATTCTTA TGCCGAAAAA TATATTCTTG ACGCAAGTAT TCGTAGAGAG GGTTCATCTC GTTTTGCAAA AGGAAATCGC TATGGAAATT TCTGGTCTTT AGGGCTTGCT TACAACCTTC ATAAGGAGTT TGATGCCCTT GCAAAAGTTT TCAACGAGTT AAAATTAAGA GCTTCTTATG GGCTTACAGG GAACTCTGGG GTAGAATTAA ACCAATACCA AGTACTTTTA GCTTATGATG CTGAATATGC TGAAAATGGA GCTGCCTACC CCAAAACGTT AGGGAATGAC GACCTTACTT GGGAGAAAAA CCGTACTTTT GATGTGGGGC TTAATTTTGC ACTATTTAAC CAGCGCTTAA GAGGCTCTGT TGCATATTAC GATAAATATA CGTATGATTT GTTGCTAAAT GTGCCTTTGT CAAGAACCAC AGGTTTTGAA GAGCAGGCTA TTAATGCAGG AGCAATGAGC AATAAAGGTG TTGAGGCTTC ATTAGGGGTT GATATTATCC GTAATAAAAA CTTCACTTGG AACTTGTCAG CTAATATAGC AACGGTTAAA AACAAGGTAG AAAAATTGGC AAAAGATGGC ACAGGCGCCG ATGTAGACCC AACAGCAGGG AGTTCATACA GACAAACCAA AGTGGGAGAA ACCTACGGCT ATTGGTATAT GCCAACTTGG GCAGGTGTCA ATGTAGATAA AGGGCTTCCT GAGTGGTATG ACAAAGATGG CAAGAAAACA TCAGACTATA ACCTCGCAGA GCGAAGATTC CAAGGTATTG CCATTCCAAA ATATTCAGGA GGTCTGTCTA CTCACCTTCA ATATAAAGGG GTATTCTTAG ATGCAACTGT TTATTTTACA GGAGGACATA AAATATATGA GCAGTATGCT CAATACTATT TGAGAACCAA TAATTTTACA ACGGTAACTT ATAATGGAGA TGCTGAGTTG CTAAATGCTT GGCAAAAACC AGGAGATGTA ACCGATGTGC CAAAAATAAC CTATTCAGGC AATGATAATT TTCATAATAC TTCTTCTCGT CACTTATACG ATGGTACTTT TGCGCGCTTG AAAGATATTA CATTGGGTTA TGAAGTGCCT TCTCAATATT TAGAAGGAAC AGGTTTTGAT GGAGTTACCT TTACCCTTAG AGGTACTAAC CTTTATACTT GGGTGAAAGA CAGCGGGCTA AAACTCGACC CAGAAGTAGG TAATAAAGAT AACACAAGGG GATTTACTAC CCTTACAACT CCACCTGTGA AATCTGTAGT TTTTGGTGTT AATTTAAAAT TCTAA
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Protein sequence | MRLNKVSFAL FLILIVQGFS WAQEREVTGT VRDASGTEMM GVAVVVKGEQ HGVQTDFNGR YSIKVAPGKT LEFSFLGMKT QNHKVGPSGR IDVVMQEEAQ VIDEVVVLGV VKKKAAESTG NTVQLSSKDI STPSAISVDQ ALQGKTPGVV INAASGTPGA EQTVMIRGVG SMNSSNKPLY VIDGVPVITE NLTEDKNTAS SMSTLASINN EDIETLTVLK DAAATALYGA RGSNGVIVIT TKSGKRGKTR FNVNTSVGFQ NDAYYKRSPL TGDQRYHLLK QGLANQFASR GVTYDTAIDF AQTNGLRING AENFNSALNN NNWSELIKNK NAVMTSADIS ASGGDEKGTY YVSLGYNRTE STVKTSDPFK RVSGLIRINR DLNDKLKLEA SVNGSWVSQN PIAEQSAYFT NPYVTKILMS PWVSPYNADG SYNVTTFNDY TSLYNYLYIK DHDISKNNTL RGLINFKVDY ELLKNLVFST RANVDYISSD YKDYQNRIHS NASKNNGSSQ RIMANHTTWV YQNTLTYNFN VAEKHKFGVT ALYEYQKYKK DYLYGYGTNI AVDGLTNLAS VTKQKTISST FEDWANVSLL GMFNYSYAEK YILDASIRRE GSSRFAKGNR YGNFWSLGLA YNLHKEFDAL AKVFNELKLR ASYGLTGNSG VELNQYQVLL AYDAEYAENG AAYPKTLGND DLTWEKNRTF DVGLNFALFN QRLRGSVAYY DKYTYDLLLN VPLSRTTGFE EQAINAGAMS NKGVEASLGV DIIRNKNFTW NLSANIATVK NKVEKLAKDG TGADVDPTAG SSYRQTKVGE TYGYWYMPTW AGVNVDKGLP EWYDKDGKKT SDYNLAERRF QGIAIPKYSG GLSTHLQYKG VFLDATVYFT GGHKIYEQYA QYYLRTNNFT TVTYNGDAEL LNAWQKPGDV TDVPKITYSG NDNFHNTSSR HLYDGTFARL KDITLGYEVP SQYLEGTGFD GVTFTLRGTN LYTWVKDSGL KLDPEVGNKD NTRGFTTLTT PPVKSVVFGV NLKF
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