| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0403 |
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| Symbol | |
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| ID | 8366809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 510629 |
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| End bp | 512095 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644982824 |
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| Product | RNA polymerase, sigma 54 subunit, RpoN |
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| Protein accession | YP_003140527 |
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| Protein GI | 256819248 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCAAAC AGAATTTACA ACTTAAACTC TCACAGAAAC TCTCACCTCA GCAAATACAG
CTGATGAAAC TCGTGCAACT CCCCACTCTT GCCTTTGAAC AACGCGTAAA ACAAGAGATG
GAAGAAAACC CCGCCTTAGA ATCAGGGCGC GAAGAAGATG CTCTTGATGA GTTTCACGAT
GAGTTCGATA ACTCTGCCGA TGAATATAAT GATAACGATG TAATTGATAT GGACGATATC
AACATCGATG AATACCTCAG TGATGACGAA ATACCTGACT ATCGCTTGCA CGCTAATAAC
TATAGCGACG ACGATGAGGA TCGCGATATT CCTTTCAGCG CAGAGGTATC GTTCCACCAA
TCTCTTATCA ACCAATTGAA CACCTTTACC CTCTCGGATG AAGATTACCT CATCGCTGAG
TTCCTCGTGG GTAGCATAGA CGATACAGGC TATATACGCC GTTCTATTCA AGACCTTACC
GACGACTTGG CTTTCACCCA AAATATCTAT ACTGAAGAGG AGCACGTAGA GCAAATACGC
CAACAGATTA TCTTCCAATT AGACCCTGCA GGAGTAGGCG CTGCCGACTT GCAAGAGTGC
TTGCTCGTAC AACTGCGTCG CAAAAAACAA ACACTTGCGA TAGGATTGGC AATCGAAATG
CTTACCGAAG CCTTTGAGGC GTTTACTAAA AAGCATTATG CCAAACTGCA ACAGCGCTTT
TTGGTAACTG AAGAACAACT AAAAGAAGCA GTGCAAGAGG TGGAACGTCT GAATCCTAAA
CCTGGAAGTT CCTACGTGGG CAACAATGTG CATATAGAGC AAATTATCCC TGATTTTACT
GTAAAAGTGG TAGACAACGA GTTAGAACTC TCCCTCAACG GACGTAATGC TCCTGAACTA
CACGTTTCTA AGGAATATAG CACTATGCTC GACACTTATA AGAAGAGTAA AGAAAAGAGC
AATTCACAAA AAGAAGCAGT GTTCTTTATC AAACAGAAGT TGGATTCGGC TAAGTGGTTT
ATAGATGCTA TTCGTCAGCG ACAACAAACG CTCCTCATCA CAATGGATGC TATAATGGAA
CACCAACGCG AATACTTCCT CACAGGTGAC GAACTGAAAA TAAAACCGCT TATTCTCAAA
GATATTGCCG ACAAGGTAGG TATGGATATT TCTACCGTTT CGCGAGTAGC GAGCAGTAAA
TATGTAACTA CCCCTTACGG TACCAAGCTC ATTAAAGATT TCTTTTCGGA ATCTATGAAG
AACGACCAAG GAGAAGACGT TTCTACCCGT GAAATCAAGC AGATATTACA ACATATCATC
GCTAAGGAAG ACAAGAGTAA ACCCCTCCCC GATGATGAAT TGGCACAGCT TCTCAAAGAG
AGAGGTTACC CCATTGCGCG TCGCACTATC GCCAAATACC GCGAACAAAT GGATATACCT
GTAGCGCGCC TCAGAAAAGA GCTGTAA
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| Protein sequence | MLKQNLQLKL SQKLSPQQIQ LMKLVQLPTL AFEQRVKQEM EENPALESGR EEDALDEFHD
EFDNSADEYN DNDVIDMDDI NIDEYLSDDE IPDYRLHANN YSDDDEDRDI PFSAEVSFHQ
SLINQLNTFT LSDEDYLIAE FLVGSIDDTG YIRRSIQDLT DDLAFTQNIY TEEEHVEQIR
QQIIFQLDPA GVGAADLQEC LLVQLRRKKQ TLAIGLAIEM LTEAFEAFTK KHYAKLQQRF
LVTEEQLKEA VQEVERLNPK PGSSYVGNNV HIEQIIPDFT VKVVDNELEL SLNGRNAPEL
HVSKEYSTML DTYKKSKEKS NSQKEAVFFI KQKLDSAKWF IDAIRQRQQT LLITMDAIME
HQREYFLTGD ELKIKPLILK DIADKVGMDI STVSRVASSK YVTTPYGTKL IKDFFSESMK
NDQGEDVSTR EIKQILQHII AKEDKSKPLP DDELAQLLKE RGYPIARRTI AKYREQMDIP
VARLRKEL
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