Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0222 |
Symbol | |
ID | 8366627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 289916 |
End bp | 291082 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644982642 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_003140346 |
Protein GI | 256819067 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0738] Fucose permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.153836 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAACAGA ATAATAACTA TCTAAAATAT TTATTGCCCG TACTTCTATC ATTCTTCTGT ATGGGCTTCG TAGACCTTGT AGGCGCCGCC TCTAACTTTG TAAAAGACGA TTTTAGCTTG ACCGAAACCA CCGCCAAAGC GCTCCCTGCA ATGGTATTCT TTTGGTTTCT GCTTTTCTCA GTGCCCACAG GCGTACTGAT GAGCAAAATA GGTCGTCGTA AAACCGTACT CCTCAGCTTA GTGATTACCA TCTTAGCAAT GGTAGTGCCT TTTATCAGCT ACAACTATAC CACTATGCTG GTAGCTTTCT CCTTGCTTGG TATTGGTAAC ACACTGATGC AAGTATCGCT AAACCCTCTA ATGTCAGCCA TAGTAAAAGG CGACAAACTC GCGAGTTCAC TCACTTTTGG TCAGTTTATC AAGGCAATAG CCTCGTTTTC TGCCCCCTTG CTAATGAGTT TCTGCTTTGA TAAATTTAAT GATTGGCGAC TTTTCTTCCT GCTCTTTGTA GCTATTTCGG TAGTATCCCT CTTGTGGCTT GGAGCTACCC ATATTGAAGA AGAGAAAAAC GACAGTAAAA ACGCCACCTT TGCCGAGTGT TTTGCACTGC TTGCTAACCC TTATGTGCTC TTGTGTTTTA TTGGCATTAT GTGCCACGTA GGGATAGACG TAGGAGTTAA TGCCTCAGCA CCTACAATCT TTATGGAACG TTTAGGGCTT ACCACTACCC AAGCCTCTTT TGCTACCAGC TGGTATTTCT TGTTCCGTAC CATAGGATGT TTGTCAGGAG CTTATATTCT CACCAAAGTA TCACCTAAGA ATTTCTTTAC CCTTAGTGTG CTTTGTATGG TAGCCTCAAT GGCGATACTG TTCTTTTTCA GTGATAAGAC AATGCTCTAC ACTGCTATTG CTTTGGTAGG TTTTGGCAAT TCCAATGTAT TCTCAATCAT CTTCTCGCAA GCCCTCTTGC AGAACCCTAC TAAGAAAAAC GAAGTGTCAG GTTTGATGAT TATGGGACTC TTTGGCGGTA CTGTCTTCCC TTTTGCAATG GGCTTAGCCT CCGATGCGAT GAACGGTTCA CAGATAGGAG CCCTTATTGT CCTCAGCATA GGAGTATTAT ACCTATTGCT AATGAGCACC CGACTCAAAG CAAATGCTAA TAGTTAG
|
Protein sequence | MQQNNNYLKY LLPVLLSFFC MGFVDLVGAA SNFVKDDFSL TETTAKALPA MVFFWFLLFS VPTGVLMSKI GRRKTVLLSL VITILAMVVP FISYNYTTML VAFSLLGIGN TLMQVSLNPL MSAIVKGDKL ASSLTFGQFI KAIASFSAPL LMSFCFDKFN DWRLFFLLFV AISVVSLLWL GATHIEEEKN DSKNATFAEC FALLANPYVL LCFIGIMCHV GIDVGVNASA PTIFMERLGL TTTQASFATS WYFLFRTIGC LSGAYILTKV SPKNFFTLSV LCMVASMAIL FFFSDKTMLY TAIALVGFGN SNVFSIIFSQ ALLQNPTKKN EVSGLMIMGL FGGTVFPFAM GLASDAMNGS QIGALIVLSI GVLYLLLMST RLKANANS
|
| |