Gene Coch_0204 details

Gene Information

• Locus tag: Coch_0204
• Symbol: def
• ID: 8366609
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 270133
• End bp: 270723
• Gene Length: 591 bp
• Protein Length: 196 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 644982624
• Product: peptide deformylase
• Protein accession: YP_003140328
• Protein GI: 256819049
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTTTAC CTATTATTGC TTATGGCGAC CCAGTGCTCA GAAAGGTAGG AACTGAAATC 
CCCCCTGATT ATCCTCAACT CAAAACACTG ATTGCTAATA TGTACGACAC TATGAATGCC 
GCTTATGGCG TGGGGCTCGC TGCTCCTCAG GTAGGTCTCT CTATACGCTT GTTCGTGGTA 
GATGCCTCTC CTTTCGCCGA TGACGATGAG CTTTCAGAAG AAGAGCAAAC TTTCTTAAAA 
GACTTCAAAA AAACTTTTAT CAATGCCAAA ATAGTAGAAG AAACAGGCGA TACTTGGAAC 
TTCAACGAAG GGTGCCTCAG TATTCCTGGC GTACGAGAAG ATGTTAGCAG GCACAAGCAA 
ATCACCATTG AATACTTTGA TGAAGACTTT AATAAGCAAA CACTTACCAT TGGCGGACTC 
GCGGCTCGTA TCATTCAGCA CGAATACGAC CATATCGAAG GCATTCTGTT CACCGATAAA 
CTCTCTTCTT TTAAACGCCA ACTCATCAAA AGTAAGCTGG CTAATATCAG TAAAGGAAAG 
GTAAAGGTAG ACTACCGAAT GAAATTCTTT GATGCCAAAA ACAAAAGATA G 

 

Protein sequence

MVLPIIAYGD PVLRKVGTEI PPDYPQLKTL IANMYDTMNA AYGVGLAAPQ VGLSIRLFVV 
DASPFADDDE LSEEEQTFLK DFKKTFINAK IVEETGDTWN FNEGCLSIPG VREDVSRHKQ 
ITIEYFDEDF NKQTLTIGGL AARIIQHEYD HIEGILFTDK LSSFKRQLIK SKLANISKGK 
VKVDYRMKFF DAKNKR