Gene Coch_0175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0175 
Symbol 
ID8366577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp211961 
End bp212641 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content41% 
IMG OID644982592 
ProductABC transporter related 
Protein accessionYP_003140299 
Protein GI256819020 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0570775 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTTAT TAGAGATTAA AAATATCAAA CGAGATTTTA GATTAGGGTC TGAAATACTG 
CACGTACTGA AAGGCATCAA CCTATCTATA GAAAAGGGAG AATACCTTGC CCTTATGGGA 
CCATCGGGCT CTGGTAAATC TACTTTGATG AACATCTTAG GGTGCTTAGA TACGCCTACC 
TCAGGCGAGT ATATTCTGAA CGGTAAAGAT GTAAGCAAGA TGAGCGACTC GGAATTAGCC 
GACATTCGCA ATAAAGAGAT AGGCTTCGTA TTTCAAACCT TCAACCTAAT GCCACGTACT 
ACGGCTTTAG ACAATGTAGC TTTGCCTATG GTATACGCAG GCGTTAAGAA AGAAAAACGA 
CACGAGCGCG CTAAAGAAGT ACTGAAATTA GTAGGATTAG AAGACCGTAT GCTTCACAAA 
CCCAATGAAC TATCAGGAGG GCAACGCCAA AGAGTAGCTA TAGCGAGAGC TTTGGTAAAC 
CACCCTTCAA TTATCTTAGC CGATGAGCCT ACTGGGAACC TTGATTCTAA AACTTCTTAT 
GAAATAATGA ACCTTTTTGA CGAAATCTAC CAAAAAGGGA ATACCGTTAT CTTGGTAACC 
CACGAAGAAG ACATTGCTCG GTATGCCAAA CGGATTGTCC GCTTAAAAGA CGGACTTATA 
GAAACTGATA GCGCTAAGTA A
 
Protein sequence
MSLLEIKNIK RDFRLGSEIL HVLKGINLSI EKGEYLALMG PSGSGKSTLM NILGCLDTPT 
SGEYILNGKD VSKMSDSELA DIRNKEIGFV FQTFNLMPRT TALDNVALPM VYAGVKKEKR 
HERAKEVLKL VGLEDRMLHK PNELSGGQRQ RVAIARALVN HPSIILADEP TGNLDSKTSY 
EIMNLFDEIY QKGNTVILVT HEEDIARYAK RIVRLKDGLI ETDSAK