Gene Coch_0175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0175 
Symbol 
ID8366577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp211961 
End bp212641 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content41% 
IMG OID644982592 
ProductABC transporter related 
Protein accessionYP_003140299 
Protein GI256819020 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0570775 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTTAT TAGAGATTAA AAATATCAAA CGAGATTTTA GATTAGGGTC TGAAATACTG 
CACGTACTGA AAGGCATCAA CCTATCTATA GAAAAGGGAG AATACCTTGC CCTTATGGGA
CCATCGGGCT CTGGTAAATC TACTTTGATG AACATCTTAG GGTGCTTAGA TACGCCTACC
TCAGGCGAGT ATATTCTGAA CGGTAAAGAT GTAAGCAAGA TGAGCGACTC GGAATTAGCC
GACATTCGCA ATAAAGAGAT AGGCTTCGTA TTTCAAACCT TCAACCTAAT GCCACGTACT
ACGGCTTTAG ACAATGTAGC TTTGCCTATG GTATACGCAG GCGTTAAGAA AGAAAAACGA
CACGAGCGCG CTAAAGAAGT ACTGAAATTA GTAGGATTAG AAGACCGTAT GCTTCACAAA
CCCAATGAAC TATCAGGAGG GCAACGCCAA AGAGTAGCTA TAGCGAGAGC TTTGGTAAAC
CACCCTTCAA TTATCTTAGC CGATGAGCCT ACTGGGAACC TTGATTCTAA AACTTCTTAT
GAAATAATGA ACCTTTTTGA CGAAATCTAC CAAAAAGGGA ATACCGTTAT CTTGGTAACC
CACGAAGAAG ACATTGCTCG GTATGCCAAA CGGATTGTCC GCTTAAAAGA CGGACTTATA
GAAACTGATA GCGCTAAGTA A
 
Protein sequence
MSLLEIKNIK RDFRLGSEIL HVLKGINLSI EKGEYLALMG PSGSGKSTLM NILGCLDTPT 
SGEYILNGKD VSKMSDSELA DIRNKEIGFV FQTFNLMPRT TALDNVALPM VYAGVKKEKR
HERAKEVLKL VGLEDRMLHK PNELSGGQRQ RVAIARALVN HPSIILADEP TGNLDSKTSY
EIMNLFDEIY QKGNTVILVT HEEDIARYAK RIVRLKDGLI ETDSAK