Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0129 |
Symbol | rpsA |
ID | 8366531 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 149083 |
End bp | 150843 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644982548 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_003140255 |
Protein GI | 256818976 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00811703 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGAAA ACACTCAAAA TCCAGAAGAG TTCTTACAGA ACTTTGATTG GGACAAATAC CAAGAAGGTA TTGACAGCGT ACAAGAAGAC CAATTGAAAA ACTTCGAAGA ATTGGTTAAA AACAATTTCG TTGACACTCA AGACAATGAA GTAGTAGAAG GAGTAGTAAC TCGTATCACT GACAGAGAAG CGATTATCGA CATCAACGCT AAATCAGAAG GCGTTATCTC TCTCAACGAG TTTCGCTACA ACCCGAACCT CAAAGTAGGT GACAAAGTAG AAGTGCTTAT CGATATCCGT GAGGATAAAA ACGGTCAGTT AGTACTTTCA CACCGCAAAG CACGTACGCT TAAAGCTTGG GATAGAATTA ACTTGGCACA CGAAAACGGC GAAATCGTAA ACGGTTTTGT AAAAAGCCGT ACCAAAGGCG GTATGATAGT AGATGTATTT GGCATCGAAG CATTCTTACC TGGTTCACAA ATCGATGTGA AACCTATCCG CGATTACGAA CAATTCGTAA ACAAAACAAT GGAATTCAAG ATTGTGAAAG TAAATCACGA GTTCAAAAAC GTAGTGGTTT CTCACAAAGC GCTCATCGAA GCAGATATCG AAGAACAGAA GAAAGAAATC ATCAGTCAGC TCGAAAAAGG ACAAGTACTC GAAGGAGTTG TGAAAAATAT CACTTCTTAC GGTGTATTTG TAGACCTTGG TGGCGTAGAC GGATTGATTC ACATCACCGA CCTTTCTTGG GCTCGTATCA ATCACCCAAG CGAAGTGGTA TCGGTAGACC AAAAACTCAA TGTGGTAATC CTCGATTTCG ACGACAACAA ATCACGTATC CAATTAGGTT TAAAACAGCT TAGCAAACAC CCTTGGGACG CTCTTGCTGA CGACCTTAAA GTAGGCGATA AAGTAAAAGG TAAAGTAGTG GTGATTGCCG ACTACGGTGC TTTTGTAGAA ATTGCTGATG GTGTAGAAGG TCTTATCCAC GTTTCTGAAA TGTCTTGGAG TACTCACTTG CGTTCTGCTC AAGATTTCGT AAAACTCGGC GACGAAGTAG AAGCTGTTAT CTTGACTCTC GACCGCAACG AGCGCAAAAT GTCTTTGGGT ATTAAACAAC TTACCCCAGA CCCTTGGATT AACATTACTG AAAAATATCC AGTAGGTTCT AAACATACAG GTACTGTTCG CAATTTCACT AATTTCGGTG TATTCGTAGA ACTCGAAGAA GGTATCGATG GTCTTATACA CATCACCGAC CTTTCTTGGA CTAAGAAAAT TAAACACCCA TCAGAATTTG TAAACTCTGG TGATAAGATT GAAGTAGTAG TACTTGAATT AGATGCCGAA GGACACAAAT TGTCATTAGG GCACAAGCAA ACCACTCCTA ACCCTTGGGA CAAATACGAA ACTGAATTTG CCGTAGGTAC AGTTCACAAA GGTACTATTT CTAAAATGGT AGATAAAGGT GCTACAGTTC CTCTCAACGA CGATATCTTA GCGTTTGTTC CTTCACGTCA CTTAGAAAAA GAAGACGGAA AGAAATTAGG TAAAGGAGAC ACTGCTGATT TCAAAGTAAT TGAGTTCAAT AAAGAATTTA AACGTGTAGT AGCTTCTCAC ACTGCTATCT TCAAAGAAGA AGAAGAGAAA ATAGCTAAAG AAGCTGCTGT AAATACCAGC TCATCTACAG TCGAAAAATC AACACTTGGT GACCTTGAAG CGTTACAAGA GTTGAAAGAC AAGATGGAAA AAGAGAAGTA A
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Protein sequence | MAENTQNPEE FLQNFDWDKY QEGIDSVQED QLKNFEELVK NNFVDTQDNE VVEGVVTRIT DREAIIDINA KSEGVISLNE FRYNPNLKVG DKVEVLIDIR EDKNGQLVLS HRKARTLKAW DRINLAHENG EIVNGFVKSR TKGGMIVDVF GIEAFLPGSQ IDVKPIRDYE QFVNKTMEFK IVKVNHEFKN VVVSHKALIE ADIEEQKKEI ISQLEKGQVL EGVVKNITSY GVFVDLGGVD GLIHITDLSW ARINHPSEVV SVDQKLNVVI LDFDDNKSRI QLGLKQLSKH PWDALADDLK VGDKVKGKVV VIADYGAFVE IADGVEGLIH VSEMSWSTHL RSAQDFVKLG DEVEAVILTL DRNERKMSLG IKQLTPDPWI NITEKYPVGS KHTGTVRNFT NFGVFVELEE GIDGLIHITD LSWTKKIKHP SEFVNSGDKI EVVVLELDAE GHKLSLGHKQ TTPNPWDKYE TEFAVGTVHK GTISKMVDKG ATVPLNDDIL AFVPSRHLEK EDGKKLGKGD TADFKVIEFN KEFKRVVASH TAIFKEEEEK IAKEAAVNTS SSTVEKSTLG DLEALQELKD KMEKEK
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