Gene Coch_0125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0125 
Symbol 
ID8366527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand- 
Start bp144380 
End bp144994 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content42% 
IMG OID644982544 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003140251 
Protein GI256818972 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.247519 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAGA CAAAAGATAT AAGCACCGAA GAACGCATCA AAGCCGCTGC CCGCAAAGTC 
TTTCATCAGA AAGGTTTTGC AGGTACACGC ACTCGCGACA TTGCCGAAGA AGCGGGTATC 
AACCACGCAA TGCTCAACTA TTATTTTCGT AGTAAAGAAA AACTCTTTGA AATGGTAATG 
ATGGAAACAA TGGCGCAATT CTTTAAAGGA GTAAACCTTA TGCTGAACGA CGAAAATACC 
TCTCTCGATG AGAAAATAGA CCTCATCGTC TCTAACTACG TCGATTTACT CCTCAAAGAA 
CCCGAATTAC CTACCTTTAT ACTCAATGAG GTGCGTCCTA ACCCGCAAGC ATTTGTAGAG 
CAAAACCCTA TTAAAGAGGC ACTTACTCAC TCTGTGCTCA CCCGTCAATA TGCCGAAGCT 
GTAGCTCGTG GCGAAATCAC AGAGCCTAAC CTAATGCAAG CTATCCTAAA CGTCATCGGG 
TTGGTAATAT TTCCTTTCAT TGCAAAACCT ATCCTAACCT TAATTGTCAA CATACCCGAA 
GAACAGTACA AAGCCCTAAT GCTCCAGCGT AAAACTCTTA TCCCACAATG GATTAAAGCG 
ATGCTATGGA AATAA
 
Protein sequence
MKKTKDISTE ERIKAAARKV FHQKGFAGTR TRDIAEEAGI NHAMLNYYFR SKEKLFEMVM 
METMAQFFKG VNLMLNDENT SLDEKIDLIV SNYVDLLLKE PELPTFILNE VRPNPQAFVE 
QNPIKEALTH SVLTRQYAEA VARGEITEPN LMQAILNVIG LVIFPFIAKP ILTLIVNIPE 
EQYKALMLQR KTLIPQWIKA MLWK