Gene Coch_0112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0112 
Symbol 
ID8366514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp133544 
End bp134662 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content43% 
IMG OID644982531 
ProductABC-2 type transporter 
Protein accessionYP_003140238 
Protein GI256818959 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0225544 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTAT TAAGCTTTAT ACTCCAAAAA GAATTTAAGC AGATATTCCG AGATAAGACC 
ATCTTGGCAA TGATGCTTGT GGCGCCTATG ATGCAGCTGA TTATATTGCC CTTAGTTGCC
AATTTCGATG TGAAGAACAT CAACCTTGTG TATATCGATC ACGACCAAAG TACCTATTCT
CACCAACTGA TACAGAAGAT TACTGCCTCG GGTTACTTTA AACTCGTAGA GGCTCCTTTC
TCTTACAAAG AAGGCATCGC CCTGATAGAA GACGGTAAAG CTGATGTAGT TTTGGAAGTA
CCCGAAGGTT TTGAGCGCAA CCTCGTACGC GAAGGAAAGC AGACACTCGG TCTCTCTATC
GATGCGATTA ATGGGAGCAA ATCGTCCTTA GGAGGGGCGT ATTTGCTTTC GGTAATACGC
GACTTCAACA CTCAGCTCGA TGTAAATGTA AAAGCCCCTC AGCGCATAGG TAATGTAGCC
AAAATCGGGG TGGAGAGTAC CCATTGGTAC AACCCCTATA TGCAATATAC GCGCTACATT
GTTCCAGGTA TTTTAGCTAT ATTGCTCACC ATTATCGGGG GGTTTCTTTC AGCACTCAAT
GTAGTCAAAG AAAAGGAAAT AGGCACTATC GAGCAGATAA ATGTAACGCC TATCAAGAAG
TGGCAATTTA TATTAGGAAA GCTTATACCC TTTTTAGTAG TAGGGTTAAT CCTCTTCACC
TTGGGGCTTA CGGTGATGTA TGTAATCTAT GGTATCTTCC CCGCAGGAAA TCTACTCACC
TTGTATGCCT TTGCTACAAT GTATCTCATT GCGATTCTCG GCTTCGGATT GCTGGTCTCC
ACCTATGCCG ATTCACAGTT GCAGGCTATG TTCATCGCCT ATTTCTTTAT AATGATATTC
CTACTGATGA GCGGCTTCCT CACCAGTGTA GACAGTATGC CTGCTTGGAG TCAACAGGTG
AGTAATGCTA TTCCGGTAAC CCATTTTGTG AATGCTGTCC GCTTAATTGT GCTCAAAGGC
AGTAGTTTTG AGCAGTTACA CATAGAGTTT TTGTATCTTG TAGGATTTGC TGTGCTACTT
AATAGTTGGG CTATTTGGAA TTATAAGAAG ACAAGCTAA
 
Protein sequence
MKVLSFILQK EFKQIFRDKT ILAMMLVAPM MQLIILPLVA NFDVKNINLV YIDHDQSTYS 
HQLIQKITAS GYFKLVEAPF SYKEGIALIE DGKADVVLEV PEGFERNLVR EGKQTLGLSI
DAINGSKSSL GGAYLLSVIR DFNTQLDVNV KAPQRIGNVA KIGVESTHWY NPYMQYTRYI
VPGILAILLT IIGGFLSALN VVKEKEIGTI EQINVTPIKK WQFILGKLIP FLVVGLILFT
LGLTVMYVIY GIFPAGNLLT LYAFATMYLI AILGFGLLVS TYADSQLQAM FIAYFFIMIF
LLMSGFLTSV DSMPAWSQQV SNAIPVTHFV NAVRLIVLKG SSFEQLHIEF LYLVGFAVLL
NSWAIWNYKK TS