Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0112 |
Symbol | |
ID | 8366514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 133544 |
End bp | 134662 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644982531 |
Product | ABC-2 type transporter |
Protein accession | YP_003140238 |
Protein GI | 256818959 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0225544 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTAT TAAGCTTTAT ACTCCAAAAA GAATTTAAGC AGATATTCCG AGATAAGACC ATCTTGGCAA TGATGCTTGT GGCGCCTATG ATGCAGCTGA TTATATTGCC CTTAGTTGCC AATTTCGATG TGAAGAACAT CAACCTTGTG TATATCGATC ACGACCAAAG TACCTATTCT CACCAACTGA TACAGAAGAT TACTGCCTCG GGTTACTTTA AACTCGTAGA GGCTCCTTTC TCTTACAAAG AAGGCATCGC CCTGATAGAA GACGGTAAAG CTGATGTAGT TTTGGAAGTA CCCGAAGGTT TTGAGCGCAA CCTCGTACGC GAAGGAAAGC AGACACTCGG TCTCTCTATC GATGCGATTA ATGGGAGCAA ATCGTCCTTA GGAGGGGCGT ATTTGCTTTC GGTAATACGC GACTTCAACA CTCAGCTCGA TGTAAATGTA AAAGCCCCTC AGCGCATAGG TAATGTAGCC AAAATCGGGG TGGAGAGTAC CCATTGGTAC AACCCCTATA TGCAATATAC GCGCTACATT GTTCCAGGTA TTTTAGCTAT ATTGCTCACC ATTATCGGGG GGTTTCTTTC AGCACTCAAT GTAGTCAAAG AAAAGGAAAT AGGCACTATC GAGCAGATAA ATGTAACGCC TATCAAGAAG TGGCAATTTA TATTAGGAAA GCTTATACCC TTTTTAGTAG TAGGGTTAAT CCTCTTCACC TTGGGGCTTA CGGTGATGTA TGTAATCTAT GGTATCTTCC CCGCAGGAAA TCTACTCACC TTGTATGCCT TTGCTACAAT GTATCTCATT GCGATTCTCG GCTTCGGATT GCTGGTCTCC ACCTATGCCG ATTCACAGTT GCAGGCTATG TTCATCGCCT ATTTCTTTAT AATGATATTC CTACTGATGA GCGGCTTCCT CACCAGTGTA GACAGTATGC CTGCTTGGAG TCAACAGGTG AGTAATGCTA TTCCGGTAAC CCATTTTGTG AATGCTGTCC GCTTAATTGT GCTCAAAGGC AGTAGTTTTG AGCAGTTACA CATAGAGTTT TTGTATCTTG TAGGATTTGC TGTGCTACTT AATAGTTGGG CTATTTGGAA TTATAAGAAG ACAAGCTAA
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Protein sequence | MKVLSFILQK EFKQIFRDKT ILAMMLVAPM MQLIILPLVA NFDVKNINLV YIDHDQSTYS HQLIQKITAS GYFKLVEAPF SYKEGIALIE DGKADVVLEV PEGFERNLVR EGKQTLGLSI DAINGSKSSL GGAYLLSVIR DFNTQLDVNV KAPQRIGNVA KIGVESTHWY NPYMQYTRYI VPGILAILLT IIGGFLSALN VVKEKEIGTI EQINVTPIKK WQFILGKLIP FLVVGLILFT LGLTVMYVIY GIFPAGNLLT LYAFATMYLI AILGFGLLVS TYADSQLQAM FIAYFFIMIF LLMSGFLTSV DSMPAWSQQV SNAIPVTHFV NAVRLIVLKG SSFEQLHIEF LYLVGFAVLL NSWAIWNYKK TS
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