| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_1686 |
|---|
| Symbol | |
|---|
| ID | 8390998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | - |
|---|
| Start bp | 1724590 |
|---|
| End bp | 1726605 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644979676 |
|---|
| Product | Exoribonuclease II |
|---|
| Protein accession | YP_003137425 |
|---|
| Protein GI | 257059537 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAAAAG GAAAACTCAT CGAAATTAGG GTACAAGGAG AACGTCGCCT AGCCGTCGTT
GATCGTCCAG AAGGGAAAAA AGATTGGATG GTCATCGATG CGGGGGGTCA ATCTCACAAA
ATTCGACCCC AACGGGTAGA ATACGAAGTC GAGGGGGGTC CCTATAGTCC TCAAGAGATC
CCCCAATTTC TGCGAGACGT GGAACCCTAC CTTGATCCAT CTAGTTTAGA AGTCGCTTGG
GAATTACTGG TAGAAGACGC AGAAGGAGTC ACGCCAGCCG GACTGTCCCA ATTACTATTT
TCAGCCAAAA CCCCCCCTCA ATGCTACGCC GCCCATAGCC TACTGTCTGA GGATAAAATT
TACTTCAAGA AAAAAGGCGA TCGCTACGAA CCCCGTCCCA GTAGTCAAGT CGAAGAAATT
AAACATCAAC TCGACGTTGA ACAGCATCGT CAGCAAGAAA AAGCGCAATT TTTTACTAAG
ATAAGACAAG CGATCGCGCA AGAACTTGTT AACTGGACAG ACAGCGATCG CAACCGTTTG
GAGTCCCTCG AACGCTTGAT CTTGCAACCA GAACAAACCC ACCGGAATGC CCAAGAATTA
CTCAGTGAGA TCGGGCGATC GCAAACCCCA GAAGCCGCCT TTGAACTCCT AGTAGAATTA
GGGTGGTGGA GTCGCCACGA AAACCTATTT CTACGGCGCA GTTCCTATCC TATGCAGTTT
CCCAAAAAGG TACTTGATGT GGCCCAATCC TTTTTAACCC TTCCTCCCCC CGATCAAGAC
GAAGATCGCC TGGATTTAAC CCATCTTAAG GTCTATACCA TCGATGATGA AAGTACCGAA
GAAATTGACG ACGGGTTAAG CGTCGAGTTT CTAAGCGACG ATCAGGTGAA ACTATGGATT
CATATTGCTG ACCCCACTCG GTTAGTTTCA CCAGGAGACG AATTAGACCT AGAAGCCAGA
AGACGGACGA CCACCCTCTA TTTACCCACC GGGATGATTT CCATGTTTCC CGTGGAATTA
GCCACCGGTC CAATGAGTTT AATTCAAGGG AAAATCTGTC CTTCCCTCAG TTTTGCTGTG
ACCCTCGACG ATCAGGGGGC AGTGTTGGAC TATTCTATCC ATGCCAGCCT TATTAAACCC
ACCTACCGCC TCACTTACTA CGATGTGGAT GAAATGCTGC AATGGGGCAT TAAAAATGAA
CCAGAGATTA GGATTTTGGC TGAAACTGCT AAAAAACGCC ATCTGTGGCG ACAATCCCAA
GGAGCTATTA ATATTAAGAT GCCAGAGGCG GTGATTAAGG TCAAATCGGA AGACGAGATC
GTTATCGAAC TGATTGAGAG TTCACGATCG CGCCAATTGG TAGCAGAAAT GATGATTTTA
GCGGGAGAAG TGGCTGGACG ATACTGTCAA GAACATGGCT TACCCGTTCC CTTCCGGGGT
CAACCTCAAC CCGAATTACC CCCCGATGAG GAATTGTTGC TATTACCACC GGGTCCTGTA
CGAGCCTGTG CTTTGCGTCG CTGTATGCCC CGCAGTGAAA TTGGGACGAT ACCGAACCGT
CACGCTAGTT TAGGGTTAAA TACCTATACA CAAGTGACCT CTCCGATTCG GCGTTATACG
GATTTATTAA CCCATTTTCA GCTTAAAGCC CATTTACGGG GGGATAAGTT GCCCTTTTCC
CTCGATATGA TGCAGCAAAT CCTCTATGGC GTTACCTTAT CAGCCCAAGA AGCGTCCTTA
GTGGAACGGC AAACCAATCG TTATTGGGGG TTAGAATTTT TGCGGCGCAA TGCGGATGAG
ATTTGGCACG GCATTGTGTT ACGGTGGTTG CGAGAAGATG AAAATTTAGG AATACTATTA
TTAGAGGAAT TGGGGTTAGA GTTGCCCCAT CGCTTTGAAA AGGCGGTTTC GTTAGGCGAT
CGCCTGAATG TTCAAGTCAG TTGTGCTGAT CCCCATCGGG ATGAAATTCG GTTTCGAGAA
ATGCTACAAC ACGAAGTTCA CTCAAGTGCC ATTTAA
|
|---|
| Protein sequence | MEKGKLIEIR VQGERRLAVV DRPEGKKDWM VIDAGGQSHK IRPQRVEYEV EGGPYSPQEI
PQFLRDVEPY LDPSSLEVAW ELLVEDAEGV TPAGLSQLLF SAKTPPQCYA AHSLLSEDKI
YFKKKGDRYE PRPSSQVEEI KHQLDVEQHR QQEKAQFFTK IRQAIAQELV NWTDSDRNRL
ESLERLILQP EQTHRNAQEL LSEIGRSQTP EAAFELLVEL GWWSRHENLF LRRSSYPMQF
PKKVLDVAQS FLTLPPPDQD EDRLDLTHLK VYTIDDESTE EIDDGLSVEF LSDDQVKLWI
HIADPTRLVS PGDELDLEAR RRTTTLYLPT GMISMFPVEL ATGPMSLIQG KICPSLSFAV
TLDDQGAVLD YSIHASLIKP TYRLTYYDVD EMLQWGIKNE PEIRILAETA KKRHLWRQSQ
GAINIKMPEA VIKVKSEDEI VIELIESSRS RQLVAEMMIL AGEVAGRYCQ EHGLPVPFRG
QPQPELPPDE ELLLLPPGPV RACALRRCMP RSEIGTIPNR HASLGLNTYT QVTSPIRRYT
DLLTHFQLKA HLRGDKLPFS LDMMQQILYG VTLSAQEASL VERQTNRYWG LEFLRRNADE
IWHGIVLRWL REDENLGILL LEELGLELPH RFEKAVSLGD RLNVQVSCAD PHRDEIRFRE
MLQHEVHSSA I
|
|---|
| |