| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_39040 |
|---|
| Symbol | |
|---|
| ID | 8389225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 4224345 |
|---|
| End bp | 4225646 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644977914 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003135673 |
|---|
| Protein GI | 257057841 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1914] Mn2+ and Fe2+ transporters of the NRAMP family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAACG ACACGCACCA CGGTGACGTG GTCGAAGACG TGCCCGTGAC CTGGAAGGCT
CGGATACGCC AGATCGGTCC GGGCATCATG GCCGCCGCCA CGGGAGTCGG CGCGGGCGAT
CTCGTCGCCA CGATGGTGGC CGGGTCCCGC TACGGCTACA CCCTGCTGTG GGCGGTGATC
CTGGGGACCG TCTTCAAACT CGCGCTCGGC GAGGCCGTCG GCCGCTGGCA TCTCACCTCG
GGGCAGACGC TGCTGGCGGG ATGGCGCACC CTCGGCAGGT GGGTGCTGGT CTACTTCGGC
GCCTACGCCG TCGTGTGGGG ATTCGTCTAC GGCGCCACCG CGATGTCGGC GTCGGGGCTG
CCACTGAACG CGCTCATTCC GGGTCTTTCG GTGCGCTACT GGGCGATCAT CTGCGGCGTA
CTCGGTTTCG TGCTCGTGTG GTTCGGACGT TACGCCGTCA TCGAGAAGAT CATGACGGTG
TTCGTGGGGA TCATGTTCGT CACGGTCGTC GGCACCGCCG TACTCGTGAC ACCGAACCTG
TTCGACGCGA GCAAGGGGCT GGTGCCCCGA CTGCCCGACG GTTCACTCGT CTACGTCCTC
GGCCTGGTCG GGGGCGTCGG CGGAACCATC ACGATGGCCG CCTACGGCTA CTGGGCCTTG
GCCAAGGGCT GGCGCTCCTC ACGCTGGCTG CCGATGCTGC GCCTCGACAA CGCGGCCGGC
TACGTCACCA CCGGCGTCTT CGTCGTGGCC ATGCTGATCG TCGGTTCGGA ACTGCTGCTC
AACCAGGAGA TCGTGACCGG CGACGCGGGT CTGCTGATGC TGGGGGACCG GCTCGCCGAG
GACTACGGGC ACTGGGCCCG TATCCCGTTC CTCGTGGGTT TCTTCGCCGT GTCGTTCACC
TCACTGATCG GGGTGTGGAA CGGTGTGAGT CTGCTGTTCG CCGACTGGTG GCGTACCTGG
CGACTGCCCG CCTACCGCAA GGGCGAGGCC GAGGCGGACC TTCAGGACTA CGAACGCAAG
GCCGGGGAGC GCAGTCCCGT CTTCCGTGCC TACCTGGTGT GGTTGACGTT CCCGCCGATG
ATGTTGCTGT TCCTCGACCG ACCGTTCCAG CTCACCGTCG CCTACGGTGT GCTCGGCGCG
CTGTTCATGC CGTTTCTGGC GGGCACGCTG CTGGTGCTGC TGAACTCGCG TCGCGTCTCG
CCTGAGGGAC GGTCCCGGTG GGTGTCGAAC ACGCTGTTGA CCGTCTGCTT GCTCCTGTTC
GCCACCCTCG CCGTGCACGA ACTGATCGAC CTGTTCGACT GA
|
|---|
| Protein sequence | MSNDTHHGDV VEDVPVTWKA RIRQIGPGIM AAATGVGAGD LVATMVAGSR YGYTLLWAVI
LGTVFKLALG EAVGRWHLTS GQTLLAGWRT LGRWVLVYFG AYAVVWGFVY GATAMSASGL
PLNALIPGLS VRYWAIICGV LGFVLVWFGR YAVIEKIMTV FVGIMFVTVV GTAVLVTPNL
FDASKGLVPR LPDGSLVYVL GLVGGVGGTI TMAAYGYWAL AKGWRSSRWL PMLRLDNAAG
YVTTGVFVVA MLIVGSELLL NQEIVTGDAG LLMLGDRLAE DYGHWARIPF LVGFFAVSFT
SLIGVWNGVS LLFADWWRTW RLPAYRKGEA EADLQDYERK AGERSPVFRA YLVWLTFPPM
MLLFLDRPFQ LTVAYGVLGA LFMPFLAGTL LVLLNSRRVS PEGRSRWVSN TLLTVCLLLF
ATLAVHELID LFD
|
|---|
| |