Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_38090 |
Symbol | |
ID | 8389130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 4129612 |
End bp | 4130196 |
Gene Length | 585 bp |
Protein Length | 194 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644977820 |
Product | haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED |
Protein accession | YP_003135580 |
Protein GI | 257057748 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.516929 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCTGGG TGGTTTTCGA CTACGGCGAA GTGATCTGCA CCCGCACAGA GGCTCTGCCG GAGCTGGCGG CTCGACTCGG CGTGCCCCCG ACCGACTTCG AATCCGCCTA CTGGGAACAC CGGGACGCCT ACGACCGCGG CATCTCCGAT GCGACCTACT GGAAGGCCGT GGCGGACACC CTCGGTGTCG ACATCGACGC CGACACGGTG GCGGAGCTCA CCCGCATCGA CGTCACGGGC TGGGCGCGGC TCCACCCGGA CTCCGCCGCC CTGCTCGAGG AACTCGCCCA CGCCGGGACG CGCCTGGCCC TGCTGTCCAA CGCGCCCGCG TCCTTCGCCC GTTTCGCCGA GCAACAGCCG TGGGCACAGC ACTTCCACAC CCGGGTGTTC TCCGCCGACG TGGGGTGCGC CAAACCGGAC GCGAAGATCT ACGAACTGTT GGTGTCACGC CTGGACGCCC GGCCACAGGA CTGTGTGTTC TTCGACGACC GGTCCAGCAA CATCGAAGGC GCCCGTGCCG TGGGACTGCG CGCCTACCTC TGGCAGGGGG CCGACCACGC ACGACAGGTG CTGACCGAAC GCTGA
|
Protein sequence | MTWVVFDYGE VICTRTEALP ELAARLGVPP TDFESAYWEH RDAYDRGISD ATYWKAVADT LGVDIDADTV AELTRIDVTG WARLHPDSAA LLEELAHAGT RLALLSNAPA SFARFAEQQP WAQHFHTRVF SADVGCAKPD AKIYELLVSR LDARPQDCVF FDDRSSNIEG ARAVGLRAYL WQGADHARQV LTER
|
| |