| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_37590 |
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| Symbol | |
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| ID | 8389080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 4080041 |
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| End bp | 4081180 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644977770 |
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| Product | putative TIM-barrel protein, nifR3 family |
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| Protein accession | YP_003135530 |
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| Protein GI | 257057698 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.298865 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGCGA CCCTGTCCAA GCCCGCCCTG CGGATCGGCC CCTACCAGGT CGATCCGCCC
GTGGTGCTCG CGCCGATGGC CGGCATCACC AATGTCGCGT TCCGTCGGTT GTGCCGCGAG
TACGGCGCCG GCCTCTACGT CTGCGAAATG ATCACCGCGC GTGCCGTGGT GGAGCGCCAC
CCCGGCACGA TGCACATGAT GACGTTCGAC GCGAGCGAGT ATCCGCGTTC GATGCAGCTC
TACGGCGTCG ATCCGGCCAC GATGAAAGAG GCCGTCAAGA TCATCGTCGG GGAGGGTCTG
GCCGATCACA TCGACGCGAA CTTCGGCTGT CCCGTCGCCA AGGTGACCCG CAAGGGCGGC
GGTGCCGCGT TGCCGTTCAA GCGGAAGCTG TTCGGCAACA TCGTGAGGGC GTCGGTGGAG
GCGGCCGAGC CCGCGGGTGT CCCGTTCACC GTGAAGTTCC GCGTCGGCAT CGACGACGAC
CACCACACGT ACCTCGACGC GGGCCGCATC GCCGAGGCCG AGGGCGCCGC CGCCGTCGCA
CTGCATGCCC GTACCGCCGC TCAGCGGTAT TCGGGTAAGG CCGACTGGTC GCACATCGCC
CGACTCAAGG AAGCGGTCAC CAGCATCCCG GTGCTCGGCA ACGGCGACAT CTTCACCGCG
CACGATGCGT TGCGCATGGT GGCCGAAACC GGCTGCGACG GCGTGGTGAT CGGACGCGGC
TGCCTCGGTA GGCCCTGGCT GTTCGGGGAA CTGGAGGCCG CCTTCGCGGG CAAGCCGATC
CCGGCAGGGC CGAACCTGGG CGAGGTCGCA CGCGTGTTGC GCCGCCACGC CGAACTGCTC
GTGGAACACG ACGGGCCGGA CAAGGCCATG CGTGACCTGC GCAAGCACAT GGCCTGGTAC
TTCATGGGGT TCCCCGTCGG TTCCCAGCTG CGTCGTAGGT TCGCGATGGT GTCGTCGCTG
GACGAGTTGG ACGAACTGAT CGCGCAGCTC GACCACGACG CGCCGTTCCC GGCCGATGCC
CTCGGTCCCC GGGGCCGTCA GGGGTCGCCG GGCAAGGTCA CGCTGCCGCA CGGCTGGCTG
GACGACCCGG ACGACCCGTG CGTCCCCGAA GGCGCCGACA TCATGCACTC CGGCGGCTGA
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| Protein sequence | MTATLSKPAL RIGPYQVDPP VVLAPMAGIT NVAFRRLCRE YGAGLYVCEM ITARAVVERH
PGTMHMMTFD ASEYPRSMQL YGVDPATMKE AVKIIVGEGL ADHIDANFGC PVAKVTRKGG
GAALPFKRKL FGNIVRASVE AAEPAGVPFT VKFRVGIDDD HHTYLDAGRI AEAEGAAAVA
LHARTAAQRY SGKADWSHIA RLKEAVTSIP VLGNGDIFTA HDALRMVAET GCDGVVIGRG
CLGRPWLFGE LEAAFAGKPI PAGPNLGEVA RVLRRHAELL VEHDGPDKAM RDLRKHMAWY
FMGFPVGSQL RRRFAMVSSL DELDELIAQL DHDAPFPADA LGPRGRQGSP GKVTLPHGWL
DDPDDPCVPE GADIMHSGG
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