| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_37330 |
|---|
| Symbol | |
|---|
| ID | 8389054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 4052543 |
|---|
| End bp | 4054642 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644977744 |
|---|
| Product | predicted RND superfamily drug exporter |
|---|
| Protein accession | YP_003135505 |
|---|
| Protein GI | 257057673 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2409] Predicted drug exporters of the RND superfamily |
|---|
| TIGRFAM ID | [TIGR00833] Transport protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.366571 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGTTTCT CGTTGCGCAC GGTTCGTTGG CTGGTCCCCG CTCTGCTCAT CGTGGCCTGG
CTCGCCCTCG GTTCCGTCGG TGGACCGTTC GCGGGCAAAC TGAGTAACGT CGCGGAGAAC
GACAGCTCCG CCTTCCTGCC CTCGTCGGCC GAGTCGACGG CGGTGTCGGA ACTGGAGCGC
GAGTTCTCCG CCATGGACGC GATCCCCGCC ATCGTGGTCG CCGAACGCGG GGCCGGGATC
ACCGAAGCCG ACCAGCGGTT CCTCGCCGAG AAAGGGCAAC AGTTCGCCGA TTGGGACACG
ACGGCGCCGG GACCGCCCCC GATCCCGTCG CAGGACGGTG AGGCGCTCGA ACTGATCGTC
CCGCTGACCG ATGACCCCCG CGACGTCGTC GACCAGATGC GACAGGCGCT CGGTGAGGGT
CGTCCCGACG GACTGGACGT CTATGTCACC GGTCCCGCCG CGCAGGTCGC CGACCTGTCG
GAGGCGTTCG GTGGCATCGA CGGCCTGCTG TTGATCGTGG CGGCCTCCGT GGTCGCCGTG
ATCCTCGTGA TCGTCTACCG CAGCCCGCTG TTGCCCCTGT TGGTGCTGTT GTCGTCGGTG
TTCGCCCTGG CCTTGGCCAG CGTGCTCGTC TACGTCCTCG CCGACGCCGG TGCCATCAGC
CTCGACGGGC AGAGCCAGGG CATCCTGTTC ATCCTCGTGT TCGGCGCCGC CACCGACTAC
GCGCTGCTGC TGGTCGCGCG GTACCGCGAG GAGCTGCAGA CGACGGCCGA CCGGTTCACG
GCCATGCGCA CCGCGTGGCG GGCCACGATC GAGCCCATCG TGGCCTCGGC GGGCACGGTG
ATCCTCGGGG TGCTGTGCCT GTTGTTCAGC GACCTGGCCT CCAACCAGGG GCTCGGACCG
GTGGCGGCCA TCGGCATCGC CGCGTCGGTG TTGGCGTCGG TGACGTTCCT GCCCTCGGTG
CTCGCCGTGT TCGGCAGGGC CGCGTACTGG CCGTTCCGCC CCCGGTACGG TTCGACGCCG
CCGGAGTCGG GTGGTGTCTG GGGCAGGATC GCCAAGCGGG TGGACCGCAG TCCGCGGGCC
GTGTGGGTGG TCACCTCGAT GGTCCTGCTG GTGGGGGTGG CGTTCGTCCC GCAGTTGAAG
GCGAGCGGAA CGTCCGATTC AGACATCTTC CTCAATCCCG TCGAGTCCGT GGCCGGGCAG
GAGGTGTTGT CGCGGCACTT CCCCGGTGGT TCCGGTGCGC CCGCGGTGGT GATCACCGAC
GAGTCCAGGG CCGAGGAGGT GCTCGCCGCG AGCAAGGTGG ACGGAGTAGC CGGCGCCGAG
ATCACCGGGA CCGCGGACGG CCTGGTGCGG ATCGAGGCCG TGCTCGCCGA CGCCGCCGAC
TCGGAGGCGG CGATCGCCAC GGTGGAACGG CTGCGCGCAT CGGTGCACGG CGTCGAGGGC
GCGGACGCCA AAGTGGGCGG CGTCACGGCC GAGCAGTTGG ACACGAGGAA GACCTCCGAA
CGCGACCGTA CGGTGATCAT CCCGATCGTG CTCGTGGTGG TGTTCGCGGT GCTCGCGCTG
CTGTTGCGGG CGGTGGTGGC ACCGCTGGTG TTGATCGCCA CCGTGGTGTT GTCCTTCGCC
ACCACGATGG GCGTGTCGGC GCTGGTGTTC AACCACGTCT TCGACTTCCC CGGTGCCGAT
CCGGCCGTGC CGCTGTTCGC CTTCGTGTTC CTGGTGGCGT TGGGGATCGA CTACAACATC
TTCCTGATGA CCCGGGTGCG CGAGGAGTCG TTGTCGGTCG GCACTCGACA GGGCACGTTG
CGTGGGCTCA CCGTCACCGG TGGGGTGATC ACGTCGGCGG GTGTCGTGTT GGCGGCGACG
TTCTCCGCGC TGGCGGTGCT GCCGATCCTG TTCCTGGCGC AGTTGGCGTT CATCGTGGCC
TTCGGCGTGC TGCTCGACAC CCTCGTGGTG CGTTCGCTGC TGGTCCCGGC GCTGACCATC
GACATCGGCA AGCGCGTCTG GTGGCCGTCG CGGCTGGCCC GGGATGAGGA ACCGGTCGAG
TCGGGACGGG GGTCGCGAAA GGAGTCATCC CAGCCGGACG GGGGGAAGCC GGTGGAGTAG
|
|---|
| Protein sequence | MGFSLRTVRW LVPALLIVAW LALGSVGGPF AGKLSNVAEN DSSAFLPSSA ESTAVSELER
EFSAMDAIPA IVVAERGAGI TEADQRFLAE KGQQFADWDT TAPGPPPIPS QDGEALELIV
PLTDDPRDVV DQMRQALGEG RPDGLDVYVT GPAAQVADLS EAFGGIDGLL LIVAASVVAV
ILVIVYRSPL LPLLVLLSSV FALALASVLV YVLADAGAIS LDGQSQGILF ILVFGAATDY
ALLLVARYRE ELQTTADRFT AMRTAWRATI EPIVASAGTV ILGVLCLLFS DLASNQGLGP
VAAIGIAASV LASVTFLPSV LAVFGRAAYW PFRPRYGSTP PESGGVWGRI AKRVDRSPRA
VWVVTSMVLL VGVAFVPQLK ASGTSDSDIF LNPVESVAGQ EVLSRHFPGG SGAPAVVITD
ESRAEEVLAA SKVDGVAGAE ITGTADGLVR IEAVLADAAD SEAAIATVER LRASVHGVEG
ADAKVGGVTA EQLDTRKTSE RDRTVIIPIV LVVVFAVLAL LLRAVVAPLV LIATVVLSFA
TTMGVSALVF NHVFDFPGAD PAVPLFAFVF LVALGIDYNI FLMTRVREES LSVGTRQGTL
RGLTVTGGVI TSAGVVLAAT FSALAVLPIL FLAQLAFIVA FGVLLDTLVV RSLLVPALTI
DIGKRVWWPS RLARDEEPVE SGRGSRKESS QPDGGKPVE
|
|---|
| |