Gene Svir_33170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_33170 
Symbol 
ID8388641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3601689 
End bp3602444 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content68% 
IMG OID644977339 
Productenoyl-CoA hydratase/carnithine racemase 
Protein accessionYP_003135108 
Protein GI257057276 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.119109 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.701419 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAACA ACGCTGAGAT CGTGGAACTG GAGATCACCG ACCGCGTGGC GACCGTGTGG 
TTGAACCGAC CGAAACGGTT GAACGCGGTG ACTCCGGAAC TCGTCGAGGA CCTGATCACC
ACGCTGCATC GGGTCGGCGC CGACACCGAC GTCGGTGCGG TCGTCCTGGC CGGACGGGGC
CGGGCGTTCT GTGCGGGCCA CGATCTCAAG CAGCCTCCGC CGCGACAGGA GTCCCGTAGG
CGGTTGGAGC GACTGCAGGA CGTCACCCGA GCCCTGCGGG GACTGCCGCA GCCCGTCGTG
GCGGCCGTGC ACGGTTACGC GATCGGCGCG GGCGCGGAGT TCGCCCTGGG GTGCGATCTC
GTCGTCGCGG CGGACGACGC CGTGTTCGCC TTCCCCGAGG TGGGGCTGGG GCTGAGCGTC
ACGAACGCGG CCTCGCGGCT GCTTCCCCTG CTGGTCGGGC CGTTGAAGGC CAAAGAGCTC
GTACTGCTGG GTGAGCGGAT CGACGCGGCG TCGGCCCACA CGCTGGGCCT GGTCAACACC
GTGGTTCCGG TCGACGATCT CGCCGAACAC GTACACCGGA TGGCGCGCAC GCTCGCCGAC
AAGCCGGCTT CCGCTCTCGC ATTGGCCAAA CGAGCGCTGG ACCACGGCAT CGACGGCCCT
TTGGAGACGG CCCTCGAACT GGAGGTCAGT CACGCACTGA TCACCGAACA CTCGCCCGAG
GTGGCCCGAT CGAAGGAGGA GTTCGATGAG CGCTGA
 
Protein sequence
MRNNAEIVEL EITDRVATVW LNRPKRLNAV TPELVEDLIT TLHRVGADTD VGAVVLAGRG 
RAFCAGHDLK QPPPRQESRR RLERLQDVTR ALRGLPQPVV AAVHGYAIGA GAEFALGCDL
VVAADDAVFA FPEVGLGLSV TNAASRLLPL LVGPLKAKEL VLLGERIDAA SAHTLGLVNT
VVPVDDLAEH VHRMARTLAD KPASALALAK RALDHGIDGP LETALELEVS HALITEHSPE
VARSKEEFDE R