| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_30190 |
|---|
| Symbol | |
|---|
| ID | 8388343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3268945 |
|---|
| End bp | 3270204 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644977048 |
|---|
| Product | aminotransferase |
|---|
| Protein accession | YP_003134821 |
|---|
| Protein GI | 257056989 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.168399 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAGC TTTCCCCGAT CCTCAAGCAG GCCACACCGG TCGTCGTCGA TCACGGCGAA
GGTGCATACC TCTACGACAC CGACGGACGT CGCCACCTCG ACTTCACCGC GGGCATCGGC
GTCACCAGCA CCGGCCATTG CCACCCCCGC GTGGTGCGCG CCGCGCAGGA ACAGATCGGC
AAGCTGATCC ACGGCCAGTA CACCACCGTC ATGCACCGTC CTCTGCTCGA ATTGAGCGAG
CGTCTCGGCG AGGTCCTGCC GAACGGACTC GACTCGCTCT TCTTCGCCAA TTCGGGCAGC
GAGGCCGTCG AGGCCGCCCT CCGGCTGACC CGTCAGGCCA CGGGCAGGCC CAACGTCGTC
GTGTTCCAGG GCGGCTTCCA CGGCCGCACC GTGGCGGCGG CGTCGATGAC CACCTCCGGC
ACTCGGTTCA GCGCCGGGTT CTCACCGTTG ATGGGCGGCG TGCACGTGGC CCCGTTCCCC
AACGCCTTCC ACTACGGCTG GGACGAGAGG ACCACCACGG AGTTCGCGCT GCGGGAACTG
GATTACCTCT TCGCCACCCA GACCTCACCG CAGGAGACGG CCGCGTTCTT CATCGAACCG
ATGCTCGGCG AAGGCGGTTA CGTACCCGCC AATACCGAGT TCTTCGCCGG CTTGCGACGC
CGCGCCGACG AACACGGCAT CCTGCTGGTG ATCGACGAGA TCCAGACCGG CTTCGGCCGG
ACCGGGAAGT TCTGGGGACA CCAGCACTTC GACGTCCGAC CCGACGTCCT CCTCATCGCG
AAGGGACTGG CCAGCGGTTT CCCGTTGTCG GGCATCGCCG CGTCGAAGGA GCTGATGAGC
AAGGCCTGGC CCGGTTCGCA GGGCGGCACC TACGGGGGCA ACGCCGTGTC GTGTGCGGCG
GCCATCGCCA CCCTCGACGT CATCGCCGAG GAGAACCTCG TCGAGAACGC GGCCGCGCGG
GGCAAGCAGT TGCTCGACGG CGCGCGGGCG ATCGGCGAGA AGACCCCGGG CATCGGCGAC
GTGCGCGGCC TCGGCCTGCT GGTGGGTTCG GAGTTCGTCA CATCCGACGG CAAGCCCGAC
GCCGCGACGG CGCAGGCTGC GCAGCAGGCC GCCGCGCAGA AGGGACTGCT CCTGCTCACC
TGCGGACCGT TCATGAACGT CGTACGGATG ATCCCGCCCC TGGTCGTGAC CGCCGAACAG
GTGGACGAGG CGCTGGAGAT CTGGGCCGAC GTCGTCGCAT CGGTGACCAC CGGCTCCTGA
|
|---|
| Protein sequence | MAQLSPILKQ ATPVVVDHGE GAYLYDTDGR RHLDFTAGIG VTSTGHCHPR VVRAAQEQIG
KLIHGQYTTV MHRPLLELSE RLGEVLPNGL DSLFFANSGS EAVEAALRLT RQATGRPNVV
VFQGGFHGRT VAAASMTTSG TRFSAGFSPL MGGVHVAPFP NAFHYGWDER TTTEFALREL
DYLFATQTSP QETAAFFIEP MLGEGGYVPA NTEFFAGLRR RADEHGILLV IDEIQTGFGR
TGKFWGHQHF DVRPDVLLIA KGLASGFPLS GIAASKELMS KAWPGSQGGT YGGNAVSCAA
AIATLDVIAE ENLVENAAAR GKQLLDGARA IGEKTPGIGD VRGLGLLVGS EFVTSDGKPD
AATAQAAQQA AAQKGLLLLT CGPFMNVVRM IPPLVVTAEQ VDEALEIWAD VVASVTTGS
|
|---|
| |