| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_28910 |
|---|
| Symbol | |
|---|
| ID | 8388215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3142401 |
|---|
| End bp | 3142865 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644976922 |
|---|
| Product | Helix-turn-helix protein |
|---|
| Protein accession | YP_003134697 |
|---|
| Protein GI | 257056865 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.38358 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCGACA CCGACGCTTA CCAGAGGATC CTGGGCGAGG AGCTGCGCAA GCTGCGGACC
GAGCGCGGTT GGACCCGTAA GGAATTGGGC GAGAAGCTCC AGAGCGGTAT CTCACTGCAG
ACTCTGGCGA CCTACGAACT GGGCACCCGA CAGTGCTCGG TGGTCCGGTT GGCCGAGCTC
TGTCTCGCGC TGGACGAACT TCCGCAGAAC CTGCTCGCTC GCGTCCACAA CAGGCTGTTC
GCCCACGAGA ACGGTCAGGT GCGGGTCAAC CTGGCCGACG TCGTCGCGGA CGAACAACCC
GAGCTCCTGC CACTGCGCCG TTGGGCGAGA GGCAGGCTCG CCGCGGGCGG CTCCGCGGAC
GTCCGATTCG ACCGGACCAC GCTGGAACAG CTCGCGGCGC TGTGTGGCCT ACGCACCGAG
GAGCTACTCA CCCGGCTGAA GAAGCTGTCA GCCGCCGCCC TGTAG
|
|---|
| Protein sequence | MIDTDAYQRI LGEELRKLRT ERGWTRKELG EKLQSGISLQ TLATYELGTR QCSVVRLAEL
CLALDELPQN LLARVHNRLF AHENGQVRVN LADVVADEQP ELLPLRRWAR GRLAAGGSAD
VRFDRTTLEQ LAALCGLRTE ELLTRLKKLS AAAL
|
|---|
| |