| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_28540 |
|---|
| Symbol | |
|---|
| ID | 8388178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3099041 |
|---|
| End bp | 3100090 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644976885 |
|---|
| Product | phosphomannose isomerase |
|---|
| Protein accession | YP_003134662 |
|---|
| Protein GI | 257056830 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1482] Phosphomannose isomerase |
|---|
| TIGRFAM ID | [TIGR00218] mannose-6-phosphate isomerase, class I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.188562 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCAC CGCTGCGTCC CGTCCGACTT CCCGCGAACC AACCCACGCA GTTCTACCGG
GGCGGCACGG CCATCGCCGC GTTCCGCTCG GCGGGAGCTC CCACCGGATC GACCGGGCGC
GCCGACGCCT TCGGCCCGGA GGACTGGGTG GCGTCCACGA CCACGTTGTT CGGACACAGC
ACCGAGGGCT TGACGCGGCT GCCCGACGGG CGGTGGTTGC GCGACGCGGT GCAGGCCGAC
CCGATCGGTT GGCTCGGCCG ACGCCACGTC GACGCCCACG GCACCTCGAC GGCACTGCTG
GTGAAGCTGC TCGACGCCGG GCAGCGGCTG CCGGTGCACT TCCACCCGGA CGACGATTTC
GCACGTCGCC ACTTCGACTC GCACTTCGGC AAGACCGAGG CGTGGATCGT CGTGGGAACA
CGCGATGCGG ACCCCACGGT GTACGCGGGT TTCCGGGAGA CCCTCGACGC CCGCACCATC
CGTGACTGGG TCGCGGAACA GGACGCCCCC TCGATGGTGA ACGCGTTGAA CGCGATCACC
GTGGAACCGG GCGACACCGT GTACATACCG GCGGGCCTAC CGCACGCGAT CGGCGAGGGC
GTGTTCGTGG TCGAACTGCA GCAACCCACT GACTTCTCAC TGACCTTGGA ATGGCGTGAC
TTCCTCGGCT CCGCGGAGAG GGGTCATCTC GGTCTCGGCT TCGACACGGC TCTTCAAGCA
CTGGACCGCT CGGGCTGGGA CGCCGAACGA CTGGCGGGTC TGATTCGGCG TACGGCTGGC
GTGACCGAGT CCAGAAGTGA CCTGCTCGTA CCGGATTCGC GGAGGTTCTT CCGCGCCGAC
CGGCTCCGGC CAGCGACGCC ACTGGCTGTC GACCCGTCGT TCGCGGTCCT CATCGTCAGC
GAAGGAGAGG GACGGCTGCG CACCGAACAC GGCGAGGTCT ACCCACTGTC CACAGGGGAC
ACCTGGGTGG TGCCGTACGC GGCGGGCGAA CTCGAACTCG ACGGCGACAT CACCGTCCTG
CGCTGCCGCC CGCCCGCGGC CGCCGCCTGA
|
|---|
| Protein sequence | MIAPLRPVRL PANQPTQFYR GGTAIAAFRS AGAPTGSTGR ADAFGPEDWV ASTTTLFGHS
TEGLTRLPDG RWLRDAVQAD PIGWLGRRHV DAHGTSTALL VKLLDAGQRL PVHFHPDDDF
ARRHFDSHFG KTEAWIVVGT RDADPTVYAG FRETLDARTI RDWVAEQDAP SMVNALNAIT
VEPGDTVYIP AGLPHAIGEG VFVVELQQPT DFSLTLEWRD FLGSAERGHL GLGFDTALQA
LDRSGWDAER LAGLIRRTAG VTESRSDLLV PDSRRFFRAD RLRPATPLAV DPSFAVLIVS
EGEGRLRTEH GEVYPLSTGD TWVVPYAAGE LELDGDITVL RCRPPAAAA
|
|---|
| |