| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_28410 |
|---|
| Symbol | |
|---|
| ID | 8388165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3084113 |
|---|
| End bp | 3085249 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644976872 |
|---|
| Product | cell wall-associated hydrolase, invasion-associated protein |
|---|
| Protein accession | YP_003134649 |
|---|
| Protein GI | 257056817 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGCTG TCGGCGGACC GCGGATCCGA AAGCTGTTGC TCGCGGTGTT ATCGGCAGCG
GTCGCCGTGA GCGTGTTCGT CGTGGCACTG CGCCTCACCC CGCAGAGCGC CGAGAGCACA
GCGGCCTCAC CGCCGAGTTC GGACCCGAGT CCGTCGTCGG TTCCGTCCAC ACCGCCGAGC
GCCGAGCCAC CGACGTCGTC GGTTCCCCCC ACGTCGAGAC TGCGCTTCGA GGAGTGGGTG
GACGACGTGG CCGACTGGCT CGACATCCCG CACCGGGCGA TGCACGCCTA TGCGACCGCG
ACGGTGCTGC TGACCGAGGA ACAACCCGAC TGTCACCTGT CGTGGGTGAC GCTGGCCGGA
GTCGGTCGCA CGGCCACCGA TCACGGTCGG GTGAACGGGG GCACGATCAC CGAGGACGGC
ACCATGTCCG AGCCCATCGA CACGGTGGAG GTCCGCGACT TCGCCGGCGA CCTGGTGTCC
GTACCCGGCG CGGCGGGACC GCTGCAGCTT TCACCGGACG TCTGGGAACG TTTCAAGGCA
AGCCCCACCG AGGGGACCCC GGACATCCAG AACATCGACG ACGCCGCTTT GACGGCGGGC
AGGGCGATGT GCGCGGGTGG TCGGGACCTC TCCGACGGCG ACGGCTGGTT GGACGGCGTG
TCGGTGCTGC AGGACGAACC GTTGTTTCTG CATCGCGTGT TGGCCACCGC CAACGTCTAC
GGCACAGTGG GCGAGAACCG CAGCGAACCG AACACCGCCG CGTTGCAGGC CGTCATGTTC
GCCGTCGACA AGATCGGCCT GCCGTACGTG TGGGGCGGTA ACGGCGAGGA AGCCGGTCAC
GACGGTTTCG ACTGCTCGGG GCTGACCACG GCCGCGTACG CCAGCGCCGG GATCACACTG
ATGCGCACGG CGCACACGCA GTACCACAGT GTCCCGTTGG TGCCCGCCGA CGAGGAACTG
CAACTCGGGG ACCTCGTGTT CTTCGGCGAT CCCGCGACCA AGATCCATCA CGTGGGCATC
TACATCGGCA ACCGACAGAT GATCGACGCG CCGACCTTCG GCCAGGCCGT GCAGGTGCAC
AACTATCGCA AGCCGGGCGA CAACTACGCG GGCGCGGGCA GGCCGACCGC GGCGTAG
|
|---|
| Protein sequence | MRAVGGPRIR KLLLAVLSAA VAVSVFVVAL RLTPQSAEST AASPPSSDPS PSSVPSTPPS
AEPPTSSVPP TSRLRFEEWV DDVADWLDIP HRAMHAYATA TVLLTEEQPD CHLSWVTLAG
VGRTATDHGR VNGGTITEDG TMSEPIDTVE VRDFAGDLVS VPGAAGPLQL SPDVWERFKA
SPTEGTPDIQ NIDDAALTAG RAMCAGGRDL SDGDGWLDGV SVLQDEPLFL HRVLATANVY
GTVGENRSEP NTAALQAVMF AVDKIGLPYV WGGNGEEAGH DGFDCSGLTT AAYASAGITL
MRTAHTQYHS VPLVPADEEL QLGDLVFFGD PATKIHHVGI YIGNRQMIDA PTFGQAVQVH
NYRKPGDNYA GAGRPTAA
|
|---|
| |