Gene Svir_28240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_28240 
Symbol 
ID8388148 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3064251 
End bp3064913 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content67% 
IMG OID644976855 
Productenoyl-CoA hydratase/carnithine racemase 
Protein accessionYP_003134632 
Protein GI257056800 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCACAT TGCACCGTCA GGAGTCCGTG TTCGTGCTCG AACTCGGCGA CGATGAGAAC 
CGCTTCTCCG TGGAGTGGTT GAAGTCCGTC CACTCCATAC TGGACACCGT CTGCGAACAC
GATGGTCCCG CCGCGCTCGT CACCGTCGGA CGCGGCAAGT TCTACTCCAA CGGCCTCGAC
CTGGAGTGGT TGCTGGCCAA CGGTGACCAG GCCGAGCGTT ACGTGACCGA CGTGCACGAG
TTGTTCGCCC GGGTGCTCAC CCTGCCGGTA CCCACGGTGG CCGCCGTGAA CGGTCACGCG
TTCGGTGCCG GTGCCATGCT GGCGATGGCG CACGACTTCC GGGTCATGCG TGCCGACCGC
GGGTTCTTCT GCTTCCCCGA GGCCGACATC AACATCCCGT TCACACCGGG TATGGCCGCG
CTCATCCAAA GCAAGCTCAC CCCGGCCGCG GCGGTCGCCT CGATGACCAC CGGCCGACGT
TTCGGCGGGC ACGAGGCGGC CGAGATCGGT CTCGTGGACG CCGTCGCGGA GGAGGACGAA
GTGCTGTCGA GCGCGTGCGA ACGGGTTCGC GCGCTGGCGG GCAAGGACCG GGGCACGCTC
GCCGCCATCA AATCCACCAT GTTCGCCTCC GCCGTCGAGG CGCTGCGTTC GACGAAGTCT
TAA
 
Protein sequence
MPTLHRQESV FVLELGDDEN RFSVEWLKSV HSILDTVCEH DGPAALVTVG RGKFYSNGLD 
LEWLLANGDQ AERYVTDVHE LFARVLTLPV PTVAAVNGHA FGAGAMLAMA HDFRVMRADR
GFFCFPEADI NIPFTPGMAA LIQSKLTPAA AVASMTTGRR FGGHEAAEIG LVDAVAEEDE
VLSSACERVR ALAGKDRGTL AAIKSTMFAS AVEALRSTKS