| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_24220 |
|---|
| Symbol | |
|---|
| ID | 8387746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2613861 |
|---|
| End bp | 2615060 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644976463 |
|---|
| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| Protein accession | YP_003134244 |
|---|
| Protein GI | 257056412 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.553679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.147194 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGAGTC AGGACTGGAC GGGACGCACG GTGGAGGCCA CCGTCGGTCC CGTCGCCCAC
GGTGGACACT GCGTGGCGCG AGTGGACGGA CGCGTCGTGT TCGTCCGCCA CGCCCTCCCG
GGGGAGCGGG TGCTCGCCCG GGTGACCGAG GACAACGGCA AGTCGTTCTG CCGCGCGGAT
GCCGTGCAGG TGCTCGCGCC CTCGCCCGAC CGGGTGGAGC CGCCGTGCCC GGTGGCCGGT
CCGGGCCTGT GCGGTGGCTG TGACTGGCAG CACGCGAGTG GGCCGGCGCA GCGTGAGTTG
AAAGCTCGCG TCGTCGAGGA ACAGCTGCGC AGGCTGGCCG GTCTCGACGT CCCGGTCACG
GTGGAACCGC TGTCCGGCGG ACTGCTGCGG TGGCGTACCA GGGTGCGGTT CGTGGCGGAC
GGCGACGGGA ACGCGGGATT GCGGGCGCAT CGCAGTCATC GAGTGGTGCC GTTGCAGGAT
TGCCCCATCA CGGTGCGACC AGCGGTGGAC GCGGTACTGC CGCATTCGTG GTCGGAAGGT
GACGAGATCG AGGCCACCGA GGACGCCGAC GGCGAGGTCC ACGTCCGGCG GCTGCCCTCC
AGGACACGTC GACAGCGTCC CGAACAACTG CGGGGTGGCA TCGCCGTGCA ACGCGCCGCG
GGACGTGACT GGAAGCTCGA CGCCCACGGT TTCTGGCAGG TACACCCCCA GGCGGCGGAC
GCGTTCGCGC AGGTCGTGCG AGAGTGGGCC GACGCCTCAC CCGGTGCGCG GGCCTGGGAT
CTCTATGCCG GGGTGGGGCT GTTCGCATCC GTACTCGCCG AGCAGGTGGG GCCGAAGGGG
CGGGTGCTCG CCGTGGAGTC GGGACGTCGG GCGGTGGCCG ACGGCAGGGC GAATCTCGCC
GGGATGCGGC AGGTGCGTTG GCGGTGCGGT CAGGTGGAAC ACGTGCTGCG GCAACGTACC
GATACGCCAC AGGTGGTGGT GCTCGATCCG CCGCGTAAGG GAGCCGGTCG GGTCGTGGTG
GAGGCCGTGG CGACAGCCGG TCCGGACCGC GTGGTCTACG TGGCCTGTGA TCCGGCCGCC
CTCGCCCGTG ACGTGGCGAT CTTCGGCGAG CACGGTTATC GACTGGACAA ACTGCGAGCC
TTCGACGCGT TCCCCATGAC CCACCACGTG GAGTGCGTGG CCCTGCTGCG ACGGGCGTAG
|
|---|
| Protein sequence | MVSQDWTGRT VEATVGPVAH GGHCVARVDG RVVFVRHALP GERVLARVTE DNGKSFCRAD
AVQVLAPSPD RVEPPCPVAG PGLCGGCDWQ HASGPAQREL KARVVEEQLR RLAGLDVPVT
VEPLSGGLLR WRTRVRFVAD GDGNAGLRAH RSHRVVPLQD CPITVRPAVD AVLPHSWSEG
DEIEATEDAD GEVHVRRLPS RTRRQRPEQL RGGIAVQRAA GRDWKLDAHG FWQVHPQAAD
AFAQVVREWA DASPGARAWD LYAGVGLFAS VLAEQVGPKG RVLAVESGRR AVADGRANLA
GMRQVRWRCG QVEHVLRQRT DTPQVVVLDP PRKGAGRVVV EAVATAGPDR VVYVACDPAA
LARDVAIFGE HGYRLDKLRA FDAFPMTHHV ECVALLRRA
|
|---|
| |