Gene Svir_22500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_22500 
Symbol 
ID8387574 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand+ 
Start bp2422691 
End bp2423290 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content68% 
IMG OID644976303 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003134085 
Protein GI257056253 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.589103 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.921764 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACGGG TCAGCCAGGA CCATCTCGCG GCGCGCCGAC GCCAGATCCT CGACGGCGCC 
CGTGTGTGCT TCACACGGTA CGGCTACGAA GGTGCCACGG TCCGGCGACT CGAGGAAGCG 
ACAGGCCTCT CCCGCGGAGC GATCTTCCAC CATTTCCGCG ACAAGGAATC CCTCTTCCTC 
GCCCTGGCCG AAGACGACGC CCGACGCATG GCCGACGTCG TCGCCAAACA GGGTCTCGTC 
CAGGTGATGC GGGACCTGCT GTCCGGAACC GGTGAGCTCC CGGCCGACTG GCTCGGGACC 
CGCCTCGAAG TCTCCCGTCG CCTCCGCACC GATCCGGATT TCCGCGCGCG CTGGGCCGAA 
CGTTCCGAAC AGCTCACCGC CGCGACCCGC AAACGCCTGC TCTGGCAACG CAACGCGGGC 
AATCTGCGGG ACGACGTGAG CGTCGACGTC CTCACCGCTT ATCTCGAACT GGTCCTGGAG 
GGCTTGGTGT CCCACCTGGC CATGGGGCTT CCCGCCGACG ACCTCGAACC GGTACTCGAC 
CTCGTCGAGG AGAGCGTCCG TCGGCACCGG GGACTGGGCT CGCCGGAGTC CGCCGGTTGA
 
Protein sequence
MPRVSQDHLA ARRRQILDGA RVCFTRYGYE GATVRRLEEA TGLSRGAIFH HFRDKESLFL 
ALAEDDARRM ADVVAKQGLV QVMRDLLSGT GELPADWLGT RLEVSRRLRT DPDFRARWAE 
RSEQLTAATR KRLLWQRNAG NLRDDVSVDV LTAYLELVLE GLVSHLAMGL PADDLEPVLD 
LVEESVRRHR GLGSPESAG