| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_21360 |
|---|
| Symbol | |
|---|
| ID | 8387460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 2298484 |
|---|
| End bp | 2299530 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644976193 |
|---|
| Product | pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit |
|---|
| Protein accession | YP_003133975 |
|---|
| Protein GI | 257056143 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.578744 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTCA CCGACAGTCC CGCACCGTCG ACCACGCCGA CGGGCCGCAA ACTGAGCACC
GCCAAGGCGA TGGTCGAGGG CATCGCCATG GAGATGGAAC GCGACGAGGA CGTCTTCGTT
CTGGGCGAGG ACGTGGGAGC CTACGGCGGT ATCTTCAGTT CCACCACGGG TCTGCTCGAC
CGGTTCGGGC CCCACCGCGT CATGGACACG CCCATTTCCG AGACCGCGTT CATCGGCACG
GCCATCGGAG CGGCCGTGGA AGGCATGCGA CCGATCGTCG AACTGATGTT CGTCGACTTC
TTCGGCGTGT GCATGGACCA GATCTACAAC CACATGGCCA AGATCCACTT CGAGTCCGGT
GGCAACGTGA AGGTCCCCAT GGTGCTGATG ACGGCCGTCG GTGGTGGATA CTCCGACGGA
GCGCAGCACT CGCAATGCCT GTGGGGCACG TTCGCGCACC TGCCGGGGAT GAAGGTGGTG
GTACCGAGCA ATCCGGCGGA TGCGAAGGGT TTGATGATCT CCGCGATCCG GGACGACAAC
CCGGTGGTGT ACATGTTCCA CAAGGGGATC ATGGGACTGC CGTGGATGGC GAAGAACCGG
CGTGCGGTCG GTCCGGTTCC GGAGGGGGAC TACGAGGTAC CGATCGGGAA GGCCAGCATC
GCGCGTCCGG GAACGGACGT CACCATCGTG ACGCTGTCGT TGTCGGTGCA TCACGCCCTG
GACGTGGCCG AGAAACTCGC CGTCGAGGGC ATCGACTGTG AAGTCATCGA CCTCCGCAGT
CTTGTCCCGC TGGACACCGA GACCGTGCTG GAGTCGGTCG GCCGTACCGG AAGGCTCCTC
GTCGTGGACG AGGACTACCT GTCGTTCGGA CTCTCCGGGG AGATCGTCGC GCGGGTCGCC
GAAGTGGACC CCGGTCTCCT GCGTGCACCG GCATGCCGGG TCGCCGTGCC CGATGTGCCG
ATCCCTTACG CCCGCTGCCT CGAGTACGCC GTTCTGCCCA CCACCGACCG GATCACCGAG
GCCGTGCTCG GCCTGATGGA ACGATGA
|
|---|
| Protein sequence | MSLTDSPAPS TTPTGRKLST AKAMVEGIAM EMERDEDVFV LGEDVGAYGG IFSSTTGLLD
RFGPHRVMDT PISETAFIGT AIGAAVEGMR PIVELMFVDF FGVCMDQIYN HMAKIHFESG
GNVKVPMVLM TAVGGGYSDG AQHSQCLWGT FAHLPGMKVV VPSNPADAKG LMISAIRDDN
PVVYMFHKGI MGLPWMAKNR RAVGPVPEGD YEVPIGKASI ARPGTDVTIV TLSLSVHHAL
DVAEKLAVEG IDCEVIDLRS LVPLDTETVL ESVGRTGRLL VVDEDYLSFG LSGEIVARVA
EVDPGLLRAP ACRVAVPDVP IPYARCLEYA VLPTTDRITE AVLGLMER
|
|---|
| |