| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_21190 |
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| Symbol | |
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| ID | 8387443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 2274665 |
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| End bp | 2278249 |
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| Gene Length | 3585 bp |
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| Protein Length | 1194 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644976177 |
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| Product | protein of Unknown Function (DUF1080) |
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| Protein accession | YP_003133959 |
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| Protein GI | 257056127 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.900923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.894931 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACGAC GAAGTCTGGG GCGCTCACTG CACGGGCGTG CACGGCCGAA CCTGTTGCGG
CGCACCACGG TCCTGATGAC GAGCACGGTC CTGGTGGCCG GCTTGTCGAC GATGTCCGCG
TCAGGGCAAC CGGAGACAGC CCTCCGCGCC GCCCCGGAAG CCGGATCCGC CAAGGCGGAC
CCGGTGCAGG TGCTGGTGTA CCACGGTGAG GCCGCCGAAC AGGACGACCC GGTCGACGAA
GCGGCCGACA CCATCCGGCA ACTGGGGACA CGGGCCGGCT TCACCGTGGA CGTGTCCAGC
GACCCCGCGG TGTTCACCTC CGAGAACCTC GACCGGTACC GCGGGGTCGT GTTCCTGTCC
GCCGAGGGCG CGGGACTCAA CAGCACACAG GAAGCCGCAC TCCGAGACTA CGTCCAGGAC
GGCGGGGGCT TCCTCGGCAT CCGGGACGCC GCGAAGGCCC AACCCGACTC CGACTGGTAC
ACCGGGCTCA TCGGTGCCCG TCCCACCGAC GACGCACAGA GCACCGAGGT CCAGGAAGCG
GTGGTCAGCG TCGTCGACCG ACAGCACCCC GCGAACAAGG GCCTGCCGTT GACCTGGACC
CGGTCCGATC GTTGGCTCAA CTGGGAGACC AACCCGATCG GTGAGGTGCA CACCATCGCA
CAGGTGCAGG AGCACACCTA CGACCCCGGT GAGAACGCCA ACGGACCGTT CCACCCGATC
TCCTGGTGCC ACGACTACGA CGGGGGTCGG TCGTTCTACA CCGCCATGGG CGGAACCGCG
GACAGCTACG GGGAGAAGGG CTTCCGTGGC CACCTGCTCG GCGCGCTGGA GTGGACCACG
GGCGTCGTCC GCGGTGACTG CCAGGCGACG ATCGCGGCCA ATTACAAGGT CGAACGGCTG
ACCGAGGAGA ACCTGCCCGG CAGACTCGAC CAGATCGGCG AACCGCACGG CCTCACCATC
GCCGACGACG GCACCGTCTT CTACATCGGC CGGGCCGCAT GCCCGAGCGG TCCCATCCCC
AACTGGGAAG ACGAGAACGT GGGTCTGGGC TGCGGCACCA TCCACGCATG GGACCCGGAG
ACCAGGCAGG CGAAGCTGGT GACCACGCTG GAGGTGTTCG GTAACCGCGG TAGCGGCGAC
GAGCTGATCA AAAGCGAGGA GGGGTTGCTC GGCATCACCC TCGACCCGGA CTTCGCCGAC
AACGGCTGGA TCTACGTCTA CTGGATGCCG TACGAATCCA TCGACACGGA CAAACGGATC
GGCAAGCGGA CGGTATCGCG GTTCACCTAC GACCACGAAA CCTCCTCGAT CGACCAGAGC
ACCCGGAAGG ACCTGCTGTC CTGGGACACC CAGATCCACA GCTGCTGCCA CGCAGGCGGT
GGCATGGACT TCGACGACGA CGGCAATCTC TACATCGCCA CGGGTGACAG CAACTCGTCC
CAGGGTTCGG ACGGCTACTC CGGTAACAAC TGGACCAAGG AGTACAAGGG GATCTCGTTC
CAGGACGCCC GCCGCACGTC GGGCAACACC AACGACCTGA ACGGCAAGAT CCTGCGGATC
CACCCCGAGG ACGACGGCAC GTACACGATC CCCGAGGGCA ACCTGTTCCC CGAGGCGGAG
TACCCCGGTG ACAAGACACG CCCGGAGATC TACGTGATGG GTGTCCGCAA CCCGTCGCGG
TTGCACTACG ACCCGGTCAA CGACTGGATC ACCACGGCCT GGGTCGGTCC GGACGCCGGG
GAACCCAACC CCGAACTGGG ACCGGCGAAG TACGAGACGG CCACCATCAT CACGTCCGCG
GGCAACCACG GTTGGCCCTA CTGCATGGGC AACCGGCAGC CCTACCGGGA CCGCAGCAAC
GAGGACGCCA GTGTGCTCAC CGGGTGGTAC GACTGCGACA ACCCGAAGAA CACCTCTCCT
CGCAACACCG GTTTGGAAGA CCTCCCGCCG GTGCGGGACA ACATGATCTG GTACTCCCCG
CAGGGCGGTG GTCCCGTCTT CCCGGAACGG GACGACGGCA GCGGCCTGCC GACCTATGAG
ATGGGCGACC AGATCTTCAC CCAGCCCTAC CTCAAGGGCG GCGCACAGGC CGTGATGGAC
GGCCCGACCT ACCACCGCTC CCAGGTGGAC ACCTCCAGTG GGGTGGCGTG GCCGGAGTAC
TGGGATGGCA AGTGGCTCAT CGGCGATCAG TCCAATGCGA ACAACCGCAT CGCGGTGACC
GTCGATCCGA GCAAGGTCGA GGAAGCGGCT CCGCCCGCCT TCGCCGAGGA CCTACGCCAC
ATCATCCCCG GCGGCGGGGG CGACGATCAG CTCCAAAGCT GGATGGACGC CGAGTTCGGT
CCGGACGGGG CACTGTATCT GCTCGACTAT GCGAACGGGT TCTTCACCTT GGAGGACAAC
CAGAAGCTGA TCCGGGTGGT TTACCAGGGT GGACCGGCCA CCCCGGCACC GACCGCGCAG
GCCTACTCGG TGCAGAACAA ACCGCTGACG GTCAGCTTCC TGGGCGAGCG CTCCGGGGGA
GTCTCCTACC ACTGGGACTT CGGCGACGGC ACCACGTCGA CGGAGGCCAA CCCGCAGCAC
ACCTACGCCG AGGTCGGTAA CTACACCGCG ACGCTGACCG TGACCTACGC CGACGGTGAG
ACCGCCACGG TCGAGACCGA GGTCGCGGTG GAGTGCGCGG TACCGGACTC CAGCCGCACG
GTCCACTTCC GCGATGACGA CACAGGGGTC ACCAACCGGG AGGTCGCGGG CGGTTGCACG
GTCGACGACC TGATCGACGA CGAGGGCAAC TGGCCCAGCA ACGACGACTT CGTCGCCCAC
GTCGAGGACG TCACCCAGAC CCTGCTGGAC GGGGGCTTCC TCAGCGAGGA CGAGCGCGCC
ACGCTGATCG AGGCGGCCAA GCGGTCCGGG ATCGGTGGGA AACAGGACGA CGGATACGAA
GCGATCTTCG ACGGGACTCC GCAGTCCCTC GAAGGCTGGC AGCAGGCTCC GGGCGGGAAC
TTCGAACTAC AGCCGGACGG GTCGCTCCGC TCGAGCGGCG GCCTCGGCAT GCTGTGGTAC
TCGGCCGAGG CGTACGGCGA CTTCTCGCTC AAACTGCAGT TCCGCGACAT CGCACCCGGC
GAACACCGGG CGAACAGTGG TGTCTTCGTC CGGTTCCCCG ATCCGCGAAC CCCGGTCGAC
GAACGCCCGG TGAGCAGTTG TGGCACCAAG GGCGCCGCCC GGGACTCCCA AGCCTGGGTT
GCCATCTACT GTGGACACGA GATCCAGATC TACGACGGCA AGTCGGGAGA ACCGCAGAAG
ACCGGGTCGG TCTACAACTT CGATCCGGTG TACTACGGCC AAGCGGGTGT GACACCCAAA
CACCAGTGGA ACGAATACGA AATCCGCGTG GAGGGGCAGC ACTACACCAT CCTCCGCAAC
GGGCGTGTGA TCAACGAGTT CGACAACACC CCCGGCAAGC AGTCGTCCCG GGACGGTGAC
CCGTCGACCG ACCTGCGTCA ATTCGTCAAC GGGTACATCG GTCTGCAGAA CCACGGCGAC
GACGACCTGG TCGAGTTCCG CAACATCCGA GTGCGAAAGC TGTAG
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| Protein sequence | MGRRSLGRSL HGRARPNLLR RTTVLMTSTV LVAGLSTMSA SGQPETALRA APEAGSAKAD
PVQVLVYHGE AAEQDDPVDE AADTIRQLGT RAGFTVDVSS DPAVFTSENL DRYRGVVFLS
AEGAGLNSTQ EAALRDYVQD GGGFLGIRDA AKAQPDSDWY TGLIGARPTD DAQSTEVQEA
VVSVVDRQHP ANKGLPLTWT RSDRWLNWET NPIGEVHTIA QVQEHTYDPG ENANGPFHPI
SWCHDYDGGR SFYTAMGGTA DSYGEKGFRG HLLGALEWTT GVVRGDCQAT IAANYKVERL
TEENLPGRLD QIGEPHGLTI ADDGTVFYIG RAACPSGPIP NWEDENVGLG CGTIHAWDPE
TRQAKLVTTL EVFGNRGSGD ELIKSEEGLL GITLDPDFAD NGWIYVYWMP YESIDTDKRI
GKRTVSRFTY DHETSSIDQS TRKDLLSWDT QIHSCCHAGG GMDFDDDGNL YIATGDSNSS
QGSDGYSGNN WTKEYKGISF QDARRTSGNT NDLNGKILRI HPEDDGTYTI PEGNLFPEAE
YPGDKTRPEI YVMGVRNPSR LHYDPVNDWI TTAWVGPDAG EPNPELGPAK YETATIITSA
GNHGWPYCMG NRQPYRDRSN EDASVLTGWY DCDNPKNTSP RNTGLEDLPP VRDNMIWYSP
QGGGPVFPER DDGSGLPTYE MGDQIFTQPY LKGGAQAVMD GPTYHRSQVD TSSGVAWPEY
WDGKWLIGDQ SNANNRIAVT VDPSKVEEAA PPAFAEDLRH IIPGGGGDDQ LQSWMDAEFG
PDGALYLLDY ANGFFTLEDN QKLIRVVYQG GPATPAPTAQ AYSVQNKPLT VSFLGERSGG
VSYHWDFGDG TTSTEANPQH TYAEVGNYTA TLTVTYADGE TATVETEVAV ECAVPDSSRT
VHFRDDDTGV TNREVAGGCT VDDLIDDEGN WPSNDDFVAH VEDVTQTLLD GGFLSEDERA
TLIEAAKRSG IGGKQDDGYE AIFDGTPQSL EGWQQAPGGN FELQPDGSLR SSGGLGMLWY
SAEAYGDFSL KLQFRDIAPG EHRANSGVFV RFPDPRTPVD ERPVSSCGTK GAARDSQAWV
AIYCGHEIQI YDGKSGEPQK TGSVYNFDPV YYGQAGVTPK HQWNEYEIRV EGQHYTILRN
GRVINEFDNT PGKQSSRDGD PSTDLRQFVN GYIGLQNHGD DDLVEFRNIR VRKL
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