Gene Svir_20820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_20820 
Symbol 
ID8387406 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand- 
Start bp2225462 
End bp2226442 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content67% 
IMG OID644976140 
ProductABC-type Fe3+-hydroxamate transport system, periplasmic component 
Protein accessionYP_003133922 
Protein GI257056090 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.017194 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGGGCT TGATCGCGGC GATGGCGTGC GCGCTCGTCG CGACGAGCGC CGCGTGTGCG 
TCGAGTGACG ACGAGGCGTC GGCGCAGGGC GAGACCCGGG TATTCCAAGC CGACAACGGT 
GAGGTCACCA TCCCCGCCGA TCCCCAGCGG GTGGTCGCCA CCGGTTACGC CGTCCCCGCC 
CTCATCGAGG CGGGTGCCCC GCTGGTCGGG ATCTCGAGCT GGCAGCGGGG TGAGCCGATG 
ATGGACCCCG AGGATCTGGC CACCTACGAG GAACTGCCGA AGGTCGCCGG TGAACTGGCG 
GCCGAGACCA ATTACGAGGC CATCGCCAAC GTGCGACCCG ATCTGATCGT CATCGGGGTG 
CCGGCGCCGG TTTTGAAGGA CATCGACATG GACCGGCTCG AACAGATCGC ACCGGTGGTC 
GCGATCGGAC CGACGGTCCC GTCGGCATGG CGGGAGTTGT CCTACAGGCA GGCCGATGCG 
GCCGGTGCGC TCGACGGCTT CAACGAGACC AAGAAGCGGT ACGAAAAGAA GGCCGCCGAG 
CTCAAGGAGA AGTACCAGGA CGTCCTGCCG GGGCTCAAAC TCGCCCACGT CGGCGCGTAC 
GGTGAGGTCG GCAAGGGCAA CTTCCAGCGT GAGTTCAACG GTTCCTGGGG CACCAACGTC 
GCCAACGACA TCGGCGCGGA CTACTACGGC GAGGTCAAGG AGAAGGGCGG CGGCTCCCGG 
GATGTGAGCG AATACCCCTC CCTTGAGGAG TTGCCGACCC TGTTCGCCGA GGCCGACGCC 
ATCACCTACA CGGTGAACGC CGACGGGTCC GTTCCGGAGT CCGTCGAGTA CGTGCTCAAC 
AGCGACCTGT GGAAGAACCT CCCGGCGGTC AAGGCGGGCC AGACCTATCC TGTCCGGTAC 
ACGGAAGCCG CGACCTACGG CCAGGCCTTG AAGGCCCTCG AGGCGCTCGA CGAGAGCTTC 
GCGCCGCTGT TGGAACAGTG A
 
Protein sequence
MKGLIAAMAC ALVATSAACA SSDDEASAQG ETRVFQADNG EVTIPADPQR VVATGYAVPA 
LIEAGAPLVG ISSWQRGEPM MDPEDLATYE ELPKVAGELA AETNYEAIAN VRPDLIVIGV 
PAPVLKDIDM DRLEQIAPVV AIGPTVPSAW RELSYRQADA AGALDGFNET KKRYEKKAAE 
LKEKYQDVLP GLKLAHVGAY GEVGKGNFQR EFNGSWGTNV ANDIGADYYG EVKEKGGGSR 
DVSEYPSLEE LPTLFAEADA ITYTVNADGS VPESVEYVLN SDLWKNLPAV KAGQTYPVRY 
TEAATYGQAL KALEALDESF APLLEQ