Gene Svir_20120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_20120 
Symbol 
ID8387339 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2144261 
End bp2145898 
Gene Length1638 bp 
Protein Length545 aa 
Translation table11 
GC content70% 
IMG OID644976075 
Productphytoene dehydrogenase-like oxidoreductase 
Protein accessionYP_003133857 
Protein GI257056025 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.191581 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00297894 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGTACGC CGAAGGCCGT GGGTGACCCG GGCTCGGACA TGGCGGCGGA CGACACAGTG 
GACGCCGTCG TCATCGGGGC GGGCCACAAC GGTCTGGTCG CCGCGAATCT GCTGGCGGAC
GCCGGATGGG ACGTCCTGGT GCTGGAGGCC ACCCCCTACG TGGGGGGAGC CGTGCGCACG
GCCGAACTCA CCGAGCCGGG ATTCCGACAC GACGTCTTCA GCGCCTTCTA TCCACTGTCG
GCCGTCTCAC CGGTCATCCG CGGTCTGACC TTGGAGCGGT ACGGACTGCG GTGGCGGCAC
GCCCCCGCCG TGCTCGCCCA CGTACTGCCG GACGATCGGG CCGCCCTGCT CCACCGGGAC
CTGGAGGCCA CCATCGCCTC GGTGTCGGCG TTCGACGCGC GTGACGGTGA GGTGTGGCGC
AACCAGTTCG ACCAGTGGCA ACGGGTGAAG GAACCGTTGT TGGACGCGCT GCTCTCCCCG
TTCCCGCCGG TGCGCGCCGC GGCGCGGTTG CTGCGCACCC TCACAGTGGC GGAGGCGTTG
CGGCTGGCGC GGATGTTGGC GATGCCCGTA CGGGCGTTGG GCACGGAGCT CTACCACGGT
GACGGTGCGC GGTTGTTGTT GGCCGGCAAT GCCCTGCACA GCGACCTCGG TCCGGATGCC
ACGGGGAGTT CGGTGTTCGG CTGGCTGCTC ACCATGTTGG GACAGGATGT CGGTTTCCCG
GTCCCCGAAG GGGGAGCCGG CGGCCTGGCC GACGCCCTGG CCACCCGCCT GAAGACCAGG
GGGGCACGCG TCGAGTGCTC CCGTGCCGTG ACGCGCGTGC TGGTGGCCGG GGGACGGGCC
CTGGGGGTGT GCGACGAACA CGGAAGCCTC ATCCGTGCGC GCCGAGCGGT GCTGGCGGAC
GTGCCCGCAC CCACGCTCTA CCGGGAATTG ATCACTCCGG AGCGGTTGCC GTCGCGACTG
CTGTCCGACC TGGAGGGCTT CCAGTGGGAC GACGCGACCG TCAAGGTGGA CTGGGCATTG
TCCGGACCCA TTCCGTGGAG CAATCCGGAG GTCGGCCGGG CGGGCACGGT GCATCTGGAC
AGTGATCTCG AAGGCCTCGC GCGCTACAGC GCCGAACTGA GCTCGGGACA GGTTCCGGTG
GAGCCGATGC TCATACTCGG GCAGATGACC ACCACCGACA CCACCCGGTC GCCTGAGGGG
ACCGAGGTCG CGTGGGCGTA CACGCACGTG CCGCAGGGTG TGGAGTGGGA CCGGGACAGG
CTGCGTCGCT TCGTGGACCG GATGGAACAC ATCGTCGAAC GGCACGCCCC CGGGTTCACC
GGCCGCATCC GGCGTCGGCA CGTGTTGGGA CCCGCCGATA TGCACCGTTG GCAGCCGAGT
CTCGTCGGCG GCGCGATCAA CGGCGGGACC GCGGCCCTGC ACCAACAACT GATCTTTCGG
CCCGTACCGG GGCTGGGTCG GGCGGACACA CCGATCGACC GGTTGTACTT GGCCAGCGCC
TCGGCGCATC CCGGTGGTGC GGTCCACGGC GCCCCGGGAG CCAATGCGGC CAAGGCCGCG
TTGGCGAGAA CGGGGTTGGC GGGAGCCGCA TACGGTCGTC TCATGCGGTC CGCACACGCC
GCTTTGTATC CCGAGTGA
 
Protein sequence
MGTPKAVGDP GSDMAADDTV DAVVIGAGHN GLVAANLLAD AGWDVLVLEA TPYVGGAVRT 
AELTEPGFRH DVFSAFYPLS AVSPVIRGLT LERYGLRWRH APAVLAHVLP DDRAALLHRD
LEATIASVSA FDARDGEVWR NQFDQWQRVK EPLLDALLSP FPPVRAAARL LRTLTVAEAL
RLARMLAMPV RALGTELYHG DGARLLLAGN ALHSDLGPDA TGSSVFGWLL TMLGQDVGFP
VPEGGAGGLA DALATRLKTR GARVECSRAV TRVLVAGGRA LGVCDEHGSL IRARRAVLAD
VPAPTLYREL ITPERLPSRL LSDLEGFQWD DATVKVDWAL SGPIPWSNPE VGRAGTVHLD
SDLEGLARYS AELSSGQVPV EPMLILGQMT TTDTTRSPEG TEVAWAYTHV PQGVEWDRDR
LRRFVDRMEH IVERHAPGFT GRIRRRHVLG PADMHRWQPS LVGGAINGGT AALHQQLIFR
PVPGLGRADT PIDRLYLASA SAHPGGAVHG APGANAAKAA LARTGLAGAA YGRLMRSAHA
ALYPE