Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_20120 |
Symbol | |
ID | 8387339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 2144261 |
End bp | 2145898 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644976075 |
Product | phytoene dehydrogenase-like oxidoreductase |
Protein accession | YP_003133857 |
Protein GI | 257056025 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.191581 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00297894 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGTACGC CGAAGGCCGT GGGTGACCCG GGCTCGGACA TGGCGGCGGA CGACACAGTG GACGCCGTCG TCATCGGGGC GGGCCACAAC GGTCTGGTCG CCGCGAATCT GCTGGCGGAC GCCGGATGGG ACGTCCTGGT GCTGGAGGCC ACCCCCTACG TGGGGGGAGC CGTGCGCACG GCCGAACTCA CCGAGCCGGG ATTCCGACAC GACGTCTTCA GCGCCTTCTA TCCACTGTCG GCCGTCTCAC CGGTCATCCG CGGTCTGACC TTGGAGCGGT ACGGACTGCG GTGGCGGCAC GCCCCCGCCG TGCTCGCCCA CGTACTGCCG GACGATCGGG CCGCCCTGCT CCACCGGGAC CTGGAGGCCA CCATCGCCTC GGTGTCGGCG TTCGACGCGC GTGACGGTGA GGTGTGGCGC AACCAGTTCG ACCAGTGGCA ACGGGTGAAG GAACCGTTGT TGGACGCGCT GCTCTCCCCG TTCCCGCCGG TGCGCGCCGC GGCGCGGTTG CTGCGCACCC TCACAGTGGC GGAGGCGTTG CGGCTGGCGC GGATGTTGGC GATGCCCGTA CGGGCGTTGG GCACGGAGCT CTACCACGGT GACGGTGCGC GGTTGTTGTT GGCCGGCAAT GCCCTGCACA GCGACCTCGG TCCGGATGCC ACGGGGAGTT CGGTGTTCGG CTGGCTGCTC ACCATGTTGG GACAGGATGT CGGTTTCCCG GTCCCCGAAG GGGGAGCCGG CGGCCTGGCC GACGCCCTGG CCACCCGCCT GAAGACCAGG GGGGCACGCG TCGAGTGCTC CCGTGCCGTG ACGCGCGTGC TGGTGGCCGG GGGACGGGCC CTGGGGGTGT GCGACGAACA CGGAAGCCTC ATCCGTGCGC GCCGAGCGGT GCTGGCGGAC GTGCCCGCAC CCACGCTCTA CCGGGAATTG ATCACTCCGG AGCGGTTGCC GTCGCGACTG CTGTCCGACC TGGAGGGCTT CCAGTGGGAC GACGCGACCG TCAAGGTGGA CTGGGCATTG TCCGGACCCA TTCCGTGGAG CAATCCGGAG GTCGGCCGGG CGGGCACGGT GCATCTGGAC AGTGATCTCG AAGGCCTCGC GCGCTACAGC GCCGAACTGA GCTCGGGACA GGTTCCGGTG GAGCCGATGC TCATACTCGG GCAGATGACC ACCACCGACA CCACCCGGTC GCCTGAGGGG ACCGAGGTCG CGTGGGCGTA CACGCACGTG CCGCAGGGTG TGGAGTGGGA CCGGGACAGG CTGCGTCGCT TCGTGGACCG GATGGAACAC ATCGTCGAAC GGCACGCCCC CGGGTTCACC GGCCGCATCC GGCGTCGGCA CGTGTTGGGA CCCGCCGATA TGCACCGTTG GCAGCCGAGT CTCGTCGGCG GCGCGATCAA CGGCGGGACC GCGGCCCTGC ACCAACAACT GATCTTTCGG CCCGTACCGG GGCTGGGTCG GGCGGACACA CCGATCGACC GGTTGTACTT GGCCAGCGCC TCGGCGCATC CCGGTGGTGC GGTCCACGGC GCCCCGGGAG CCAATGCGGC CAAGGCCGCG TTGGCGAGAA CGGGGTTGGC GGGAGCCGCA TACGGTCGTC TCATGCGGTC CGCACACGCC GCTTTGTATC CCGAGTGA
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Protein sequence | MGTPKAVGDP GSDMAADDTV DAVVIGAGHN GLVAANLLAD AGWDVLVLEA TPYVGGAVRT AELTEPGFRH DVFSAFYPLS AVSPVIRGLT LERYGLRWRH APAVLAHVLP DDRAALLHRD LEATIASVSA FDARDGEVWR NQFDQWQRVK EPLLDALLSP FPPVRAAARL LRTLTVAEAL RLARMLAMPV RALGTELYHG DGARLLLAGN ALHSDLGPDA TGSSVFGWLL TMLGQDVGFP VPEGGAGGLA DALATRLKTR GARVECSRAV TRVLVAGGRA LGVCDEHGSL IRARRAVLAD VPAPTLYREL ITPERLPSRL LSDLEGFQWD DATVKVDWAL SGPIPWSNPE VGRAGTVHLD SDLEGLARYS AELSSGQVPV EPMLILGQMT TTDTTRSPEG TEVAWAYTHV PQGVEWDRDR LRRFVDRMEH IVERHAPGFT GRIRRRHVLG PADMHRWQPS LVGGAINGGT AALHQQLIFR PVPGLGRADT PIDRLYLASA SAHPGGAVHG APGANAAKAA LARTGLAGAA YGRLMRSAHA ALYPE
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