Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_19780 |
Symbol | |
ID | 8387305 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 2109631 |
End bp | 2111001 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644976041 |
Product | SPFH domain, Band 7 family protein |
Protein accession | YP_003133823 |
Protein GI | 257055991 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.295891 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.000474854 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGATCATCA CGCTCTCGAA GTCACTGATG GTGGTGCCAC AAGCGCAATC GGCGGTCATC GAACGGCTCG GCCGGTTCCG CACGGTCGCC GGACCGGGAC TGAACTTCCT GGTGCCGTTT CTGGACAAAG TGCGGGCCAG GGTCGACTTG CGCGAGCAAG TGGTGTCCTT CCCGCCGCAG CCGGTCATCA CACAGGACAA CCTGACCGTG TCCATCGACA CGGTCGTGTA CTTCCAGGTC ACCGATTCAC GCGCGGCGGT GTACGAGATC TCGAACTACA TCGTCGGTGT CGAACAACTG ACCACCACCA CGCTGCGTAA CCTGGTCGGC GGCATGTCGC TGGAGGATGC ACTCACCTCC CGTGACCAGA TCAACAGCCA GCTGCGGGGT GTGCTCGACG AGGCCACCGG CCGGTGGGGT ATCCGCGTGG CCCGGGTGGA GTTGAAGGCG ATCGATCCGC CGCCTTCCAT CCAGGACTCG ATGGAAAAGC AGATGCGCGC CGACCGGGAG AAGCGCGCCA TGATCCTCAC CGCCGAAGGT GAGCGCGAGT CGGCCATCAA GACCGCCGAG GGGCAGAAGC AAAGCCAGAT CCTCGCCGCC GAGGGCGCCA AGCAAGCGGC CATCCTGGCC GCGGAGGCCG AACGGCAGTC CCGCATTCTG CGCGCACAGG GTGAACGCGC CGCCCGCTAC CTGCAGGCGC AGGGTCAAGC CAAGGCCATC GAGAAGGTGT TCGCCGCGAT CAAGGCGAGC AAGCCGACCC CGGAGGCGTT GGCCTACCAG TACTTGCAGA CGTTGCCGCA GATGGCGCAG GGCGACGCCA ACAAGGTGTG GCTGGTGCCC AGCGACTTCG GCAAGGCCCT CGAAGGGTTC GCCCGCCAGT TCGGCACCAA GGGCGACGAC GGTGTCTTCC GCTACGAACC GCCCGCCGAG GAGACCCCCT CACCCTCGAT GGACGACGAG GAGGTCGCAG GATGGTTCGA CACGAGCACC GACCCCAAGG TCGCCGAAGC GGTGCGGGAA GCCGAGGCCG TGGCCCGGCA GGAAGTGCCC AGCCCACTGA CCAGCCCCGG TGGTCCCACT CCGCCCGCCG CGTCGGTGTT GAAGGGATCG GGATCCCAGC CTGCTGAACC GCCGACGGCG AGCACATCGG AACCCTCGCC GCAGCCTCCG ACACCGCCGG CGGTGCCCCC GGCCCAGCCG CAGCCGCCCG CTACGCCACC GAACCCGCCA CAGCAGCAGG GTGGCGGTGT CCCGTTCGGC GGCCCCCAGC CGGGTAACTA TCCGCCCCAG GGTGGACAGC CGCCCCAGGG TGGACAGCCG CCCCAGGGTG GGCCCATGCC CCCACAAGGC CCGCCTTTCG GCCGGCAGTG A
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Protein sequence | MIITLSKSLM VVPQAQSAVI ERLGRFRTVA GPGLNFLVPF LDKVRARVDL REQVVSFPPQ PVITQDNLTV SIDTVVYFQV TDSRAAVYEI SNYIVGVEQL TTTTLRNLVG GMSLEDALTS RDQINSQLRG VLDEATGRWG IRVARVELKA IDPPPSIQDS MEKQMRADRE KRAMILTAEG ERESAIKTAE GQKQSQILAA EGAKQAAILA AEAERQSRIL RAQGERAARY LQAQGQAKAI EKVFAAIKAS KPTPEALAYQ YLQTLPQMAQ GDANKVWLVP SDFGKALEGF ARQFGTKGDD GVFRYEPPAE ETPSPSMDDE EVAGWFDTST DPKVAEAVRE AEAVARQEVP SPLTSPGGPT PPAASVLKGS GSQPAEPPTA STSEPSPQPP TPPAVPPAQP QPPATPPNPP QQQGGGVPFG GPQPGNYPPQ GGQPPQGGQP PQGGPMPPQG PPFGRQ
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