| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_18090 |
|---|
| Symbol | |
|---|
| ID | 8387136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 1877341 |
|---|
| End bp | 1878300 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644975877 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003133659 |
|---|
| Protein GI | 257055827 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.502124 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.864979 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGC GGCAGCTGGA ATACTTCGTC GCGGTCGCAG AGGAGCGGAA CTTCACGCGG
GCAGCCGAAC GAGTGCACGT CAGCCAGTCC GGGATCAGTG CGCAGATCCG GCAACTCGAG
CGGGAGCTGG GGGCCACCCT GTTCGACAGG TCCACGCGCA CGGTCACGCT GACCCCTGCG
GGAAGGGCCG CGCTCGACCA CGCCCGCGCC GCCCTCGCCG CGGCCGCGGC CGTCGACCAG
GCCGTGAGCG ACGTGACCGG GCTGCTTCGC GGCCGCCTCA CCGTCGGCAT GGTCATCGGC
TGCACCCTCA CACCGTTGTT CGACGCTTTA GCCGCGTTCC ACCGCGCTCA TCCCGGTGTC
GAGCTCTCGT TGTGGGAGGA CAACTCCGAC CGACTCGTCG ACGGCGTCCG CGCAGGAACC
CTCGACCTCG CGCTCGTCGG AGCCGCCGGG GCCCCACCGC ACGACCTGAA CGCTCTGACG
ATCATCAGCG AGCCACTGGT CGCCGTCGTC CCTCCCGGAC ACCCGTTGGC GACGCAGCCG
CAAGTCAGCC TGGGCGACCT TGTCGACCAT CCTCTCGCCT GCATGCCACC CGGGACCGGG
CTGCGCGCGG TGTTCGACGA AGCCTGCACC GTGCGCGGCA TCGAACCCAC GATCACGTGG
GAGGCCAGCG CCGCCGACGC GCTCGCCGAA CTGACCTTCC GCGAACTCGC CGTCGCCGTC
CTCAGCGAAT CGATGGCCAC GCACTATCGG GACCGGCTCA CCGCACTCCC GCTGGACGAC
GTCGACATCC CCGCCCTGCT CGCTCTGGTG TGGAAACCCT CCACCAATCC CGCCCTGCAC
GCGCTGATCG AGCACTGCGA ACAGGCGTTC GGCGAGTCGG CACCGACGCC GACCGGCCCG
CAGCGGACAG CGGAGAGCGC GACGAGTCGG AAACGCCGTA AGAACCCGCC TCCGCGCTGA
|
|---|
| Protein sequence | MELRQLEYFV AVAEERNFTR AAERVHVSQS GISAQIRQLE RELGATLFDR STRTVTLTPA
GRAALDHARA ALAAAAAVDQ AVSDVTGLLR GRLTVGMVIG CTLTPLFDAL AAFHRAHPGV
ELSLWEDNSD RLVDGVRAGT LDLALVGAAG APPHDLNALT IISEPLVAVV PPGHPLATQP
QVSLGDLVDH PLACMPPGTG LRAVFDEACT VRGIEPTITW EASAADALAE LTFRELAVAV
LSESMATHYR DRLTALPLDD VDIPALLALV WKPSTNPALH ALIEHCEQAF GESAPTPTGP
QRTAESATSR KRRKNPPPR
|
|---|
| |