| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_10500 |
|---|
| Symbol | |
|---|
| ID | 8386387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 1080619 |
|---|
| End bp | 1081992 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644975140 |
|---|
| Product | dihydrolipoamide dehydrogenase |
|---|
| Protein accession | YP_003132933 |
|---|
| Protein GI | 257055101 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.107097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.115157 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGACG CTGAAGCCGA CCTGGTGATC CTTGGTGGCG GATCCGGTGG TTATGCCGCG
GCGTTCCGCG CCGCCCAGCT GGGCCTATCC GTCACTCTGA TCGAGAAGGA CAAGCTGGGC
GGCACCTGCC TGCATCGAGG CTGCATTCCG ACCAAGGCGT TGCTCCACGC CGCCGAGGTC
GCCGACTCGG CGCGGGACGG CGAACAGTTC GGCGTCAAGA CCGTGTTCGA CGGCGTCGAC
ATCGCCGGTG TCCACAAGTA CAAGAATTCG GTGGTCACGC GGCTGTACAA GGGACTGCAG
GGACTCGCGA AGGCCCACAA GATCAACTAC GTGGAGGGCA CCGGGACCTT CGTCGGCGGC
ACCACCGTCG ACGTGGAAGG CACCCGCTAC ACCGGGAAGC ACCTCGTGCT CGCCACCGGT
TCGTACTCGA AGACGATCCC CGGTCTGGAA CTCGGCGGGC GCATCATCAC CAGCGAGGAC
GCGCTGTCCC TCGACTTCGT ACCCAAGAAG GCCGTCGTGT TGGGCGGCGG CGTGATCGGC
GTCGAGTTCG CCAGTGTCTG GGCCTCCTTC GGTTCCGAGG TCACCATCGT AGAAGCGCTG
CCCCGACTGG TACCGGCGGA GGACGAGTTC TCCTCCAAGC AGCTTGAGCG GGCGTTCCGT
CGGCGCAAGA TCGCTTTCAA GACGGGTGTG AAGTTCACCG GCGCGAAGCA GGACGAGAAC
GGCGTCACCG TGTCGTTGGA GTCCGGTGAA ACCCTCGAGG CCGACGTGCT GCTGGTCGCC
GTGGGTCGAG GCCCGAACAC CGCGGGTCAC GGCTACGACG AGGCGGGCGT CCGCATGGAA
CGCGGTTTCG TGCTGACCGA CGAGCGCCTG CGCACCAACC TTCCGAACGT CTACGCCGTC
GGCGACATCG TGCCGGGCCT GCAGCTGGCA CACCGTGGTT TCCAGCAGGG TGTCTTCGTC
GCCGAGGACA TCGCGGGGCT CAACCCGACC CCCATCGACG AATCCGGCAT CCCGCGGGTC
ACGTACTCCC ACCCCGAGGT GGCGTCCGTG GGCCTGACCG AGGTCCAGGC GAAGGAGAAG
TACGGTCCCA ACATCACCAC CTTCACCTAC GACCTGGCGG GCAACGGCAA GAGCCAGATC
CTCAAGACCT CCGGTGCCGT GAAGCTCATC AAGGCTCCCG ACGGCCCAAT CGTCGGGTTG
CACATGGTCG GGGACCGCGT CGGCGAGCTG ATCGGTGAGG CGCAACTCAT CTACAACTGG
GAGGCATTCC CCGAGGATGT CGCCCCGTTG ATCCACGCCC ACCCCACTCA GACCGAGGCC
CTCGGCGAAG CGCACCTCGC TCTGGCTGGC AAGCCGCTGC ACGTGCACGG CTGA
|
|---|
| Protein sequence | MTDAEADLVI LGGGSGGYAA AFRAAQLGLS VTLIEKDKLG GTCLHRGCIP TKALLHAAEV
ADSARDGEQF GVKTVFDGVD IAGVHKYKNS VVTRLYKGLQ GLAKAHKINY VEGTGTFVGG
TTVDVEGTRY TGKHLVLATG SYSKTIPGLE LGGRIITSED ALSLDFVPKK AVVLGGGVIG
VEFASVWASF GSEVTIVEAL PRLVPAEDEF SSKQLERAFR RRKIAFKTGV KFTGAKQDEN
GVTVSLESGE TLEADVLLVA VGRGPNTAGH GYDEAGVRME RGFVLTDERL RTNLPNVYAV
GDIVPGLQLA HRGFQQGVFV AEDIAGLNPT PIDESGIPRV TYSHPEVASV GLTEVQAKEK
YGPNITTFTY DLAGNGKSQI LKTSGAVKLI KAPDGPIVGL HMVGDRVGEL IGEAQLIYNW
EAFPEDVAPL IHAHPTQTEA LGEAHLALAG KPLHVHG
|
|---|
| |