Gene Svir_10440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_10440 
Symbol 
ID8386381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand+ 
Start bp1074699 
End bp1075334 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content66% 
IMG OID644975134 
Producttranscriptional regulator 
Protein accessionYP_003132927 
Protein GI257055095 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0189255 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0235057 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGTGG CGGTAACAAG GTCCAGGCGG GACGACTACA CGGAATCCAC CCGCGACGCG 
TTGATCGGCA GCGCCGTCGC CCTGTTCACC GAGCGCGGCT ATGCAGGGAC ATCGCTCGAC 
GAGATCGCGC GGCGGGCCCG GGTGACCAAA GGTGCGCTCT ACCACCACTT CAGCGGTAAA 
CAGGCCGTGT TCGAAGCCGC TTTCGACGCG GTGGAGACAG AGGTCAAAGG TCGACTGGAA 
AAAATCCTGC GCGGCGACGG AACGCCTTGG GAACGCGCGG TCGCCGGGTT ACGGGAGTTC 
ATCTCCAGCT GCCTCGATCC GGCTTACCAG CGGATCGCGT TGCACGAGGC CCCTGTCGTG 
ATGGGCTGGC AGCGTTGGCG CGCCGCCGAG GAACGCTACA GCTTCGGACT CATCAAAGCC 
GCCCTGCAGG ACCTCATCGA CGCGGGTGAC ATGATCAGCG TGCCGGTGGA CGTCGCCTCC 
CGGCTGCTGT TCGGCGCGCT GTCCAGCGCC GCCACGGAGA TCGCGGGCTC CGCCGAACCC 
GAACGGGTGG GAGCCGAGAT CGAACAAGTG GTGATCGCGT TGTTGCAGCA GGTGCGGGAC 
GCCTCACGTG GCGCACGTCC CGACCACCCT CGTTAA
 
Protein sequence
MNVAVTRSRR DDYTESTRDA LIGSAVALFT ERGYAGTSLD EIARRARVTK GALYHHFSGK 
QAVFEAAFDA VETEVKGRLE KILRGDGTPW ERAVAGLREF ISSCLDPAYQ RIALHEAPVV 
MGWQRWRAAE ERYSFGLIKA ALQDLIDAGD MISVPVDVAS RLLFGALSSA ATEIAGSAEP 
ERVGAEIEQV VIALLQQVRD ASRGARPDHP R