Gene Svir_09540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_09540 
Symbol 
ID8386291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp979251 
End bp980534 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content68% 
IMG OID644975044 
Producttranscriptional regulator/sugar kinase 
Protein accessionYP_003132838 
Protein GI257055006 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1940] Transcriptional regulator/sugar kinase 
TIGRFAM ID[TIGR00744] ROK family protein (putative glucokinase) 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.208854 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATGAGC CCAGTACGGA ACTACTGGAA AGCTATGCAC GCCTGCTCGA TCTTGTACGC 
AGCGGTGTCG CCGATACCCG TCCCGCTCTG AGCCAACGCA CCGGCCTCGG CAGAACGGCC
ATCACCCAAC GCACCACCAC GCTTCTCGAC GCGGGACTGT TGGAGGAGGG AGACCTCAAC
CCCTCCACGG GAGGTCGGCA GGCCAGAACT CTGCGCTTCT GCAAGGACGC CGGTCGCATC
CTCACCGCGG AACTCGGCGC CACCGGTTTC ACGGCGGGGA TCACCGACCT CATGGGCACG
GTGCTCACCA AGCGGCATCG AGACTGCGAC ATCGCCCAAG GCCCGGATCC CGTCCTCTCC
GAAGTCGAGT CCACACTCGA CGAGCTGCTG CGGGAGATCG ACGGCGCGCC GTCGGATGTG
TGGGGCGTCG GCCTCGGGCT TCCGGGACCG GTGGAATTCG CCACCGCCCG ACCGTCCGAG
CCACCGATCA TGCCCGGCTG GAACAACTAT CCGGTGCGGG AACGGCTCGT CGCGCGGTAC
AACGCGCCGG TGTGGGTGGA CAACGAGGTC AACCTGCTGT GCCTCGGCGA ACTCCGCGCA
CCCGGCATGT CGGACGACCT GGGTGACCTG CTCTACGTCA AGATCGGCAC CGGCATCGGC
GCGGGAATAA GCCACGCCGG ACACCTACAC CGCGGCGCCC AGGGCTGCGC CGGTGACATC
GGCCACGCCG CCGTCACCGA CGACAACACC GTCGTCTGTC GCTGCGGCAA GACCGGCTGC
CTCGAAGCCG TCGCGGGAGG AGCCGCGCTC GCCAGGGACG GCGAACAGCT GGCCCGTTCC
GGAAAGAGCC CCGTGCTCGC CGCCATCCTC AACACCAAGG GGACCATCAC TGCCGCCGAC
GTCACCACGG CCGCGGGCGC GGGTGACCAT CACGCCGTGC AGTTGCTCGT GGCCGCGGGC
CGACGCATCG GCGCCATGCT CGCCACGATG GTGAACTTCT ACAATCCGTC CACCATCCTC
CTCGGCGGCA AGATCGCGGA AGCGGGTGAT CTGTTCCTCG CCATCATCCG CGAAACCATC
TACCGCCGTT CCCTCCCGCT GTCCACCCGC GAGCTCCGCA TCGAGAAGGC CCGGCTCGGT
GAGGAGGGCG GGCTCGTCGG CGCCGCCTAC ATGGTGCTCG ACGAGCTGTT CTCCGTACGG
CACTTCGGTA AATGGCTCCC GGCCGGTTCC CCGAGCGGTA TCGCCGACCT ACACGGGACG
AACGGCGTCG CCCAACGGGC TTGA
 
Protein sequence
MDEPSTELLE SYARLLDLVR SGVADTRPAL SQRTGLGRTA ITQRTTTLLD AGLLEEGDLN 
PSTGGRQART LRFCKDAGRI LTAELGATGF TAGITDLMGT VLTKRHRDCD IAQGPDPVLS
EVESTLDELL REIDGAPSDV WGVGLGLPGP VEFATARPSE PPIMPGWNNY PVRERLVARY
NAPVWVDNEV NLLCLGELRA PGMSDDLGDL LYVKIGTGIG AGISHAGHLH RGAQGCAGDI
GHAAVTDDNT VVCRCGKTGC LEAVAGGAAL ARDGEQLARS GKSPVLAAIL NTKGTITAAD
VTTAAGAGDH HAVQLLVAAG RRIGAMLATM VNFYNPSTIL LGGKIAEAGD LFLAIIRETI
YRRSLPLSTR ELRIEKARLG EEGGLVGAAY MVLDELFSVR HFGKWLPAGS PSGIADLHGT
NGVAQRA