Gene Svir_07960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_07960 
Symbol 
ID8386133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp816704 
End bp818038 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content67% 
IMG OID644974887 
ProductHelix-turn-helix protein 
Protein accessionYP_003132683 
Protein GI257054851 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCGGG AACCCGAACC GATCCTCCGA CAGCGTCAGG CCCTGGGGGC CCAGCTGGCC 
GCATTCCGTC AGGCCGCGGA TCTCACCCAG GGGCGGTTGG CCAAGGCCGC GCTCTGCGAT
CGCACGACAC TGGCCCACAT CGAGAAGGGG CGTGCCCGTG CCGACGAGCG GTTCTGGCGC
GCGTGTGACG AGGCCGTCGG CGCACACGGC GTGCTGTTGA GCGCGTTCCA CGACCTGGTG
GCCGCGAAGC AGGACTACGA ACAGCGGGAG AACCAACGAC GGCTCGCCCA GGCCCGGGTC
CGCGCGCAAC GGTTGAGTAC GAACGGACCT CCCGGCCCCG CCTCCGCGTC GTCGTTGTGC
GACGACGGGG AGGTGATCGA GTCCCCGGGC CCGCCCGTCC GGCTCGACGG TTCCTATGTC
GAGACACTCC ACAGTCGTAT CCGGGAGCTC GTCGAGCTCG ACATCCAGTT CGGCGGTGAT
CAATCCTCCG GTGTCGCGTT CCGGCTCTTC CGTTCCGTCC ACAGGAAATT GGGGACCGCT
CAGTGCGATC CCCGGGTCGA ACGTGACCTG TATGCGGCGA CCGGGGAGCT CGGTGAGGTC
GCCGGCTGGT TGCTCTACGA CGCGGGCCGA CACGGTCTGG TGCGTCGGGT CAACCACGAG
GCGTTGCATC TGTCCCGTTT GGCCGGTGAT CGCAGCATGG AACTGTTGAC GCTGCAGAAC
ATGTCCATGC ACGCCGGTCA CCTCGGCCGT CCCGTGGAGG CCCTGCGCAT CGCGCGTATG
GTGTTGGAGA CCAACAGGCT CTCACCCCGG CTGCAGGCGC TTTTCCGCAC CCGTGAGGCC
CGTGCCCTGG CGTTGGCGGG TGACGAGACC GCGGCCAAAC GGACCTTCCG TCGGGCTCGT
TCGTTGTATT TGGATGGTGT GCGGGACGAC GACCCGGCAT GGGCCTGGTG GATCAACGAC
CAGGAACTGG CCTGGCACGA GGCCATGATC CACGCCGACT CCGACGAATG GGAACGTGCC
GCCGACCTCT TCGAGACCTC GATCGAGGTC ACTCCCGGCC GTGAGGTCCG ACGGCGCTAC
AACCATCTCG CCTCCCTGTT CGACGCGCAG GTCCACGCAC AAGCCTGGTG CGATGCGGGC
CGGACCATCG AACGCATCAT GCCGTTCGTC GACGAGGTCG GTTCGACCCG AACCGCGACC
ACGTTGTGGG GCGCGCTCGA CAAACTCGAC GCCACCCGTC CCACCTCGAC ACTGCGCGAA
GCCGCCCACC AGTTGCGGAG TGTGCTGACC GACGCCGGAT ACGGCCCCCT GGACACAGAC
CACGGTGTGA GCTGA
 
Protein sequence
MAREPEPILR QRQALGAQLA AFRQAADLTQ GRLAKAALCD RTTLAHIEKG RARADERFWR 
ACDEAVGAHG VLLSAFHDLV AAKQDYEQRE NQRRLAQARV RAQRLSTNGP PGPASASSLC
DDGEVIESPG PPVRLDGSYV ETLHSRIREL VELDIQFGGD QSSGVAFRLF RSVHRKLGTA
QCDPRVERDL YAATGELGEV AGWLLYDAGR HGLVRRVNHE ALHLSRLAGD RSMELLTLQN
MSMHAGHLGR PVEALRIARM VLETNRLSPR LQALFRTREA RALALAGDET AAKRTFRRAR
SLYLDGVRDD DPAWAWWIND QELAWHEAMI HADSDEWERA ADLFETSIEV TPGREVRRRY
NHLASLFDAQ VHAQAWCDAG RTIERIMPFV DEVGSTRTAT TLWGALDKLD ATRPTSTLRE
AAHQLRSVLT DAGYGPLDTD HGVS