Gene Svir_06490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_06490 
Symbol 
ID8385987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp662956 
End bp664164 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content66% 
IMG OID644974746 
ProductABC-type sugar transport system, periplasmic component 
Protein accessionYP_003132547 
Protein GI257054715 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGATCA ACGTCTACTA CGCCCCGGAA GACAACTTCC AGACGGTCGT CGACAACTGC 
AACACACAGG CGAACGGTCG CTACGAGATC GTCTATCACA AGCTCCCTAG GGACGCCGAC
GGCCAGCGTG AGCAGATGGT GCGCAGGCTC GCGGCGGGTG ACACGTCGAT GGACGTCCTC
GGTCTCGACG TCACCTGGGT GCCCGAATTC GCCGAGGCAG GTTGGATCGA GGAGTGGACC
GGTGAGAACA AGGCCGAGGC CGAGCGGGAC GTCCTCCCCG GTCCGCTGAA GACGGCGCAG
TGGGACGGCA AGCTGTACGC CGCGCCGAAG AACACCAACG TCCAGCTGCT CTGGTACGAC
GACCGGATCA CTCCGGAGCC GCCCCGGACG TGGGAGGAGA TGATGGAGAC CTCGCGGCGG
CTGCGGGAAC AGGGCAAGCC GCACGAGATC GTGTTCACCG GAGCCCAGTA CGAGGGTCTC
GTCGTGGTGT ACAACTCGAT CACCGAATCG GCGGGCGGTC GCATCCTGTC CGAGGACGGC
GAGTCGGTGA TCGTCGACGA GGGCGCGGTC CGGGCGTTGG AGATCCTGCG GGAGGTCAGC
TCCAGCGGGC TCACCGACCC GTCGCTGACC AACCAGCGGG AGGACGAGGT CCGGCTCACG
TTCCAGCAAG GGAACGCCGC GTTCCAGTTG AACTGGCCGT TCGTCTACGC CTCCTACGCC
TCGGAGAAGC CCGACGAGCT GCAGCACATG AAGTGGGCGC CGTATCCCGG GGTGGGCGAT
GCGGACTCCG GTCGCAGCAC CATCGGTGGT TACGACCTCG CGGTCAGCGC GACCTCCCGG
AACAAGCCGG AGGCGTTCGA GGCGGCGCTG TGCCTGCGTA GCGCGGAGAA CCAGAAGTTC
TCGGCGCTGA TGGACGGGGT GCCGCCCACG ATCGAGTCGG TCTACGACGA CACCACGCCG
CTCGATCCGT CGAAACCGGC GGACCCCGAG GACAACCCGA CGATGGAAAT GAAGTACCCG
ATGAAGGACG CGATTCGGGA CGAACTGAAG GACGCGGCCG TGCGACCGCT GACTCCGGCT
TATCAGAACC TGTCCATCGT GATGGCCAAG GTGCTCTCGC CACCGGGGGA GATCGACCCC
GAGCGGACCG CGGCCGAGCT GCGCGAACAG CTTGAGGAAG CGTTGAGCTC GAAGGGTGTG
ATCCCGTGA
 
Protein sequence
MRINVYYAPE DNFQTVVDNC NTQANGRYEI VYHKLPRDAD GQREQMVRRL AAGDTSMDVL 
GLDVTWVPEF AEAGWIEEWT GENKAEAERD VLPGPLKTAQ WDGKLYAAPK NTNVQLLWYD
DRITPEPPRT WEEMMETSRR LREQGKPHEI VFTGAQYEGL VVVYNSITES AGGRILSEDG
ESVIVDEGAV RALEILREVS SSGLTDPSLT NQREDEVRLT FQQGNAAFQL NWPFVYASYA
SEKPDELQHM KWAPYPGVGD ADSGRSTIGG YDLAVSATSR NKPEAFEAAL CLRSAENQKF
SALMDGVPPT IESVYDDTTP LDPSKPADPE DNPTMEMKYP MKDAIRDELK DAAVRPLTPA
YQNLSIVMAK VLSPPGEIDP ERTAAELREQ LEEALSSKGV IP