| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_06050 |
|---|
| Symbol | |
|---|
| ID | 8385943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 618208 |
|---|
| End bp | 619848 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644974702 |
|---|
| Product | acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II |
|---|
| Protein accession | YP_003132503 |
|---|
| Protein GI | 257054671 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0872557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAACA CAACGGTGCC GCATCCTCCC GGACTTCCGA CGTCGTTGAC CTACCCCGAC
GCGCCCGTGG GATCGCTGCT CGCGGGCGCC GCGTCCCGCT ATCGCGACCG GATCGCGTTC
CGACACGCGG ACGAGGAACT GAGCTTCTCC CAGCTGTGGT CCTCCGCGTG TCGCTTCGGC
AACGCCCTGC GGGAGCGCGG TGTGGGGCCC GGCGACACCG TCGCGCTGCA CCTGCCGAAC
TGCCTGGCCT TCCCGATCGC CTATTACGGG ACCCTGCTGG CGGGTGCGAC GTTCAGTCCG
GCCAATCCGC TCCTCCCGCC GAAGGCGTTG GCCGAGCAGC TCGCCGACGC TGACGCGCGG
GTCGTGGTCA CCCATGGCGG GGTGGCCGAC GCACTGTCGG GATTGGACAT CGAACTGGTG
CTGACCTACC GGCCTCGGGA AGCGGCGGCG CTGGACTTCG AGAAGTTCAT CGCCGACGCG
CCCGAGGACC GCCCCGACGT CGAGATCGAC GCGGCCCGGA CCCTCGCGCA CCTGGGCTAC
ACCGGTGGTA CGACGGGGCG GTCGAAAGGA GTGCGGTTGA CCCACCGCAA CGTGGTCGTC
AACGCCCTGC AGTACGTGTG CTGGGGCTCA GGATCGGTGC CCGTCCTCGA CGACGCGGGG
GAGGTCACGG TCACTCAGAT CGGCGACGAG GCCGAATGGA CCACACCACT GGGTACGGGC
GTGAGCATCA ACCTCACGCC GTGGTTCCAC GCGATGGGGA TCGGCGGGCT CAACATCGGC
GTGCTCAGCG GGGCGAGCGT CACGATCCAC GACCGGTTCG ACCCGCGTTC CTACATCGCC
GACGCCGAGC GGTTGCGGGT GACGTCGATG AGCGGTGCAC CCGCTCTGTT CGCCGCACTG
CTGGCCTGTC CGGATTTCCA CACCGCCGAT CTGTCGTCGG TGCGGGGGAT CACCTCGGGG
GCGGCGCCCA TGCCGCGTGC GATGGGTGAA GCGTTGCTCG CCCGCTTCCC CGACGCGGTG
ATCACCGAGG GATACGGCCT CACCGAGGTG ACGATGGGGG CCACGATCGC GCCGAGTTGG
CGTTCCGGTG TGCGCAAGGT GGGCACGGTG GGCGTGCCGA TCTTCGACAC GGAAGTCAAG
ATCATGTCCG TGGACGGCGT CGAGGAACTG CCGCCGAACA CGCCGGGCGA GGTGTACCTG
CGCGGTCCGC AGGTGATGCA GGGCTACCAC AACCGCCCGG AGGAGACCGA GGCCGTGTTC
GCCGACGGCT GGTTGCGCAC CGGCGACATC GGGATGCTCG ACGACGACGG CTATCTGTCT
ATTGTGGATC GAGCTAAGGA CATGCTCCTC TACAAGGGCT ACAACGTGTA TCCCCGGGAG
CTGGAGGAGT TGCTGACGGC CCTGCCCGGG GTGGCGGCGG CCGCCGTGGT GGGGCGTCCC
GACCCGAACG TCGGTGAACT ACCCGTCGCG TTCGTGGTGC GCGCGCCGGG CCAGGACGGG
ATGACGCCCG ACGCCCTCAT GCAAGCCGTC AACGAGCAGG TACTGCCCTA CAAACGGATA
CGGGAGGTCC GTTTCGTCGA CGCGATCCCC ACCTCCGCCG CCGGGAAGGT CCTCAAGCGG
CGGCTGCGGG AACAGCTCTA G
|
|---|
| Protein sequence | MPNTTVPHPP GLPTSLTYPD APVGSLLAGA ASRYRDRIAF RHADEELSFS QLWSSACRFG
NALRERGVGP GDTVALHLPN CLAFPIAYYG TLLAGATFSP ANPLLPPKAL AEQLADADAR
VVVTHGGVAD ALSGLDIELV LTYRPREAAA LDFEKFIADA PEDRPDVEID AARTLAHLGY
TGGTTGRSKG VRLTHRNVVV NALQYVCWGS GSVPVLDDAG EVTVTQIGDE AEWTTPLGTG
VSINLTPWFH AMGIGGLNIG VLSGASVTIH DRFDPRSYIA DAERLRVTSM SGAPALFAAL
LACPDFHTAD LSSVRGITSG AAPMPRAMGE ALLARFPDAV ITEGYGLTEV TMGATIAPSW
RSGVRKVGTV GVPIFDTEVK IMSVDGVEEL PPNTPGEVYL RGPQVMQGYH NRPEETEAVF
ADGWLRTGDI GMLDDDGYLS IVDRAKDMLL YKGYNVYPRE LEELLTALPG VAAAAVVGRP
DPNVGELPVA FVVRAPGQDG MTPDALMQAV NEQVLPYKRI REVRFVDAIP TSAAGKVLKR
RLREQL
|
|---|
| |