| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_06010 |
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| Symbol | |
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| ID | 8385939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 612343 |
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| End bp | 614829 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644974698 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003132499 |
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| Protein GI | 257054667 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.224192 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCACCG ACTCCGCGAG CCCACACGGT CGCAGTGACG CCGACCTGAT CGCGTCGGTC
CGTGCGGGCC GGATCGAGGA GTACGGCGCC CTCTACGAAC GTCACGTGAA GGCCGCCACC
CGGCTGGCCC GGCAGTGGTA CCCGATGGAC CGGGTAACGG CCGACGAGGT CGTCGCGGAG
GCGTTCGCCA CGGTGCTCGA CACCCTTCGC GAGGGCAAGG GCCCGGACAG CGCTTTCCGG
GTGTACCTGT TGAGCACGGT GCGCGCGACG GCCGCCAACC GTGTTCGGGG GGCGAAACCG
ATCGGCGGTG CCACCCTCTC CCCCACACCC GCGGAGTCGG AACGGACGTC ACCGACCGGG
TACGAGACGT CGTTCCCCCC GTCCGCCGTC CCCTCCACAC CGTCCTCAGC GTCCCCGGCG
TCCCCGCAGG CCTCGCCCGA TCTCGCGTTC GGAGATCGGG AACACCTGGA ACGCAGCCTC
ATCGCGCGAG CGTTCTCCCG GTTGCCGGAA CGTTGGCAGG CCGTGCTGTG GCACACGGTG
ATCGAACAGG AATCACCGTC GGACATCGCG CCCCTGTTGG GGTTGTCGCC CAACACCGTG
TCGGCACTGG CCTATCGAGC GCGCGAGGCA CTGCGGCAGG AATGTCTGCG AGCCCACCTG
GCCGAAACAT CGGCACACCG ATGTCGGGCC ACGGCCTCCA AACTCGGCGT GTGGGCACGT
GACGGCCTGT CGCTTCGGGA ACGCGCCCAG GTGGAGCAGC ATCTCGATCA CTGTGCTCGC
TGTCGGGCGC TCGCCGACGA ACTGGCGGAC GTCAACGCCT CCCTCCGCGG TGTGGTGGCC
CTCCTCGTCC TCGGCGGCGC GGCGTTCGGT TATCTCGCCG CCACCGGTGG GGTGGCCTCG
GCCGTCACCA CGGGGTCTCC CGCTGCGGTG ACGGGGCCAC GGCACTTCCT CGGCGTCGCC
GTGTCCGGAG TCGCCTTGGC CACGGCCATC GCCGTCGCGT TGACCGCGGG TGGGGTCAAC
GGCGCTCCGG TGGCACAGCA GTCACCAGAG CCCACCCACG AGCAGCAACC GCCGACGACA
TCGCCCCCGT CGGCACCCTC GGTGTCGCCG TCGCCGTCCA CCGAGCTCCC TTCCCCGCAA
CCGTCGTTGC CCGCACTGCC GGTCCCGCGG CCGGAGGCCG GTTCGTACCA ACCGCCGAAA
GCCTCCGAGC CGATCCCACC CCCACCGCTG CCGCATCCAC CCTCGGACGG CGCGGACACC
GAGGAACCCC GACGACCGCC CACGACACCC CCGCCGTCCG GGGGAGTCGG AGACGACATG
CTCCCGCCGA GTCCCCGACT CACGGCGTCG GCTCCCCGGG ACGGGGTCAC CTTGGACGCG
GGTGGCGAGG CCGCTGGACT CGACATCACC GTCCGCAACG ACGGAGACGC CGTCGCGGAA
GGCATCACCG TGGAACTGCG GCTGCCCGAC GGGGTGACGG CCGTCGACGC CCCCGACGAC
GGGGACGACG AGGACGGCGG AGACGACGGT CAGGACGATG ACGACGCCGG CGCCGAGGAT
GGTGCCGAGG ACTCCGGCAC ACCCGACGAG GACGGCACCG AAGACGGTGT CACCCAACTC
GCCGCCGAGA CCGCCACGGG CCCCGCCGAC GGAACGGCCC GCAGCGGTTC CCCGGCCCGA
GCGCGAACCG GCTCCGGCAC AGCGACGGCG GATGAGGGAA CGGCGGGCAA GGAGGTGACC
TGCCCGGCGG GCGAAGGCAC GGTCACCTGT GTCGTCACAG ACCCACTTGA ACCGGACGAA
TCGGCACTCC TGCGGTTCCG TGTCGCGGCC TCCTCCACGG CCTCCTCGGG CGCGGCCGTG
GGAACGGTGA CCGCCGCGGA CACGGACCCG GCTCATTTCA CGGTTCCGAT CACCGTCAAC
CGGGACGCCG CGGACCTCGA CGTCTCCTCG GCGGGCGAGT ACCTGCTCGT GAAACTACGC
AACGAAGGGG TCCGGCAGGC CGACGCGACC GTGACCCTGA CCGTGCCCGC CCGGCTCCTC
ACCACCCATC GTCTGGAGTG TGAGACCGGA TCCGACGATG ACCCGCTGCG GTGTGAATCG
CGCCGTCCCC TCGCCCCGGG CGGCACCGCG CGGCTGTGGC TCCGTCTCCC CCACTCCCAC
GACGGCGCGG TGACGGTCAT CGGCACGGTC GGGGACGCCA CCGTGACGGA GACGGTCGAG
CCGAACCCGT CGCTGCCCGA CCTGCCCGGC CCGGTCCTGC CGGGTGCCCC CGACGCCGAG
ACCCCGCCTC CCGAACCCAC CAGGCCCACC GAGGACCCCG CGTCCACCCC GGCCGCGACG
ACCCCGGAGG ACCCGGCCGA CACGATCACC GTGACTCCGA CGCCGAGCCC CACATCGCAG
AAGCACGCGT GGTCGCCGCT GGCCGAACTC CGGAAGTGGT TCTCCAGACG GGCCGGGCGA
CGCATTCGGC CACGTCAAGC TACGTAG
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| Protein sequence | MATDSASPHG RSDADLIASV RAGRIEEYGA LYERHVKAAT RLARQWYPMD RVTADEVVAE
AFATVLDTLR EGKGPDSAFR VYLLSTVRAT AANRVRGAKP IGGATLSPTP AESERTSPTG
YETSFPPSAV PSTPSSASPA SPQASPDLAF GDREHLERSL IARAFSRLPE RWQAVLWHTV
IEQESPSDIA PLLGLSPNTV SALAYRAREA LRQECLRAHL AETSAHRCRA TASKLGVWAR
DGLSLRERAQ VEQHLDHCAR CRALADELAD VNASLRGVVA LLVLGGAAFG YLAATGGVAS
AVTTGSPAAV TGPRHFLGVA VSGVALATAI AVALTAGGVN GAPVAQQSPE PTHEQQPPTT
SPPSAPSVSP SPSTELPSPQ PSLPALPVPR PEAGSYQPPK ASEPIPPPPL PHPPSDGADT
EEPRRPPTTP PPSGGVGDDM LPPSPRLTAS APRDGVTLDA GGEAAGLDIT VRNDGDAVAE
GITVELRLPD GVTAVDAPDD GDDEDGGDDG QDDDDAGAED GAEDSGTPDE DGTEDGVTQL
AAETATGPAD GTARSGSPAR ARTGSGTATA DEGTAGKEVT CPAGEGTVTC VVTDPLEPDE
SALLRFRVAA SSTASSGAAV GTVTAADTDP AHFTVPITVN RDAADLDVSS AGEYLLVKLR
NEGVRQADAT VTLTVPARLL TTHRLECETG SDDDPLRCES RRPLAPGGTA RLWLRLPHSH
DGAVTVIGTV GDATVTETVE PNPSLPDLPG PVLPGAPDAE TPPPEPTRPT EDPASTPAAT
TPEDPADTIT VTPTPSPTSQ KHAWSPLAEL RKWFSRRAGR RIRPRQAT
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