| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_05990 |
|---|
| Symbol | |
|---|
| ID | 8385937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 610478 |
|---|
| End bp | 611761 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644974696 |
|---|
| Product | signal transduction histidine kinase |
|---|
| Protein accession | YP_003132497 |
|---|
| Protein GI | 257054665 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.466231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGTC GCATCCTGCT CGCGATCCTG CTCGCGGTCG CCGTGACGGG TGCCGCGCTC
GGTGTTCCCC TCGGCGTCAC CACCTGGTTG CTCGTCGAGA ACCTCACCCG GGAGGATCTG
GCTTCCAGCG CCCAGCGGAT CGCGGCGATC CTCGACGACC AGCTGGCCGA CGGTCGTGCG
TTGGATCTCG GCCAGGTCAG GGCCGCCGTG CCGAAGAACG GCAATCTCAC GGTCGTTCGG
CAGGGCACGC CACCGTTGTG GTACGGCCGA CGGCTGGGAC CCGACGTGGT CGTCGAGACG
GTGCCGATCG CGCAGAACGG GACCGTTCGA CTGGCCATTC CGGCCGAGCC GATGCGCACC
CAGCAGACCC AGGTGGCGGC GGCGGTGCTG CTGGTGGTGG TGTTGTCGGT GGGCATGGGA
ACCGTGGTGG CGACCGTCAC CGCCCGTAGA CTCGCCCAAC CGCTGCGACA CGTGGCCGAC
CGTGCGGCTC GGCTCGGCAG CGGTGACTTC CGCCCCGACC GGCGTCGCTA CGAGGTGCCG
GAACTCGACA TGGTGGCAGA CGCCCTCGAC GCCTCGGCCA CGGCGTTGGC CCAGTTGGTG
CAACGGGAGC GGCAGCTCGT CGGTGACGTG TCGCACCAGT TGCGCAGTCG GTTGACCGCG
TTGCAGCTGC AGTTGGAACC GTTGACCGCA CACCCCGATC CGGAGGTCAC CGAGTCGGCG
CGTGCGGTCC AGGAGCAGGC CGACCGGTTG ACGGAGGTGC TCGACGAGCT GTTGGCCGCC
GCTCGTGCCG CCAGTGAAGT GGGTGCGGAA CCCATCGATC TGTCCGGATT GTTGAGCGAG
ATCGTCGACG AATGGCGGCA GCTGTTCAAA CGACGTAACC GGACGCTTCG ACTCAAGGCC
GGTGAAGGGT TGTGGGCCAG GGCCACGCCG GGTCGGTTGA AGGAGATCCT GGGCGTGCTG
CTCGACAACT CGATCAAACA CGGCGCCGGA ACGGTGACGG TGACCGCGCG CCGGGGGGAG
AACGACAACA CCGTGGTGGT GCAGGTCCAG GACGGGGGCA CGGGCATCCC GGACGACCTG
GCCGCGCACG TGTTCGAACG CGGCTTCTCC GGTGCCGGTT CCACAGGGGT GGGGCTTGCG
TTGGCGCGGG CCTTGGCCGA GGCCGACGGG GGACGGCTGG AGTTGTCGGT GCGAAGCCCG
GCGACGTTCA GCCTGTTCCT TCGGGTACCG CGGCCCAGTG ACGTCGCCGG AGTGAGTTGG
CCCGCTGAAC GGGTACCGCG CTAG
|
|---|
| Protein sequence | MRRRILLAIL LAVAVTGAAL GVPLGVTTWL LVENLTREDL ASSAQRIAAI LDDQLADGRA
LDLGQVRAAV PKNGNLTVVR QGTPPLWYGR RLGPDVVVET VPIAQNGTVR LAIPAEPMRT
QQTQVAAAVL LVVVLSVGMG TVVATVTARR LAQPLRHVAD RAARLGSGDF RPDRRRYEVP
ELDMVADALD ASATALAQLV QRERQLVGDV SHQLRSRLTA LQLQLEPLTA HPDPEVTESA
RAVQEQADRL TEVLDELLAA ARAASEVGAE PIDLSGLLSE IVDEWRQLFK RRNRTLRLKA
GEGLWARATP GRLKEILGVL LDNSIKHGAG TVTVTARRGE NDNTVVVQVQ DGGTGIPDDL
AAHVFERGFS GAGSTGVGLA LARALAEADG GRLELSVRSP ATFSLFLRVP RPSDVAGVSW
PAERVPR
|
|---|
| |