| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_05250 |
|---|
| Symbol | |
|---|
| ID | 8385863 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 528713 |
|---|
| End bp | 530821 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644974622 |
|---|
| Product | Lhr-like helicase |
|---|
| Protein accession | YP_003132426 |
|---|
| Protein GI | 257054594 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.592976 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCAGG CCCTCGAGCG CCTGCATTCC GCGGTGGTGC ACCACCTGGT CAACACACTG
GGCTGGCGGT CATTGCGGCC CCTGCAACAA CAGGCCGTCG CCCCTGTGTT GGACGGACAC
GACGCGCTGC TGCTTGCCCC CACCGCGGGC GGCAAAACCG AAGCCGCCTG TTTCCCCGTC
CTCACAGCGA TGGAGCAACA GCGCTGGACC GGGCTGTCCG TGTTGTACGT CTGCCCGTTG
AAGGCGTTGC TCAACAACCT CCTGCCCCGC CTGCGGGATT ACGCCGCTTG GTTGGGGCGC
CGGGTGGAAC TCTGGCACGG CGACGTCCCG GCAACAGCTC GGCGACACAT CCTCCGTGAC
CCACCGGACA TACTGCTGAC CACGCCAGAG TCGGTAGAAG CGATGCTGGT CAGCGCCAAT
GTCGAACACC AGCGGCTGTT CGGAAATCTA CGCGCGATCG TCGTGGACGA GGTGCACGCA
TTCGCCGGCG ACGACCGTGG CTGGCACCTA CTGGCCGTGC TCGAACGGCT CACCGTGCTC
GCCCAGCGAC CCATCCAACG CATCGGCCTT TCCGCCACGG TCGGCAACCC CGAACAGCTG
TTGCATTGGT TGCAGGGCTC AGGACGGGGG CATCGGCCCG CCACCGTTGT CGCGCCCGGC
GTGCACGCAC CGAGCGCGAC ACCACAGGGC GACATCGAAC TCGACTACGT CGGTTCTGTC
GACAACGCGG CCACGGTGAT CTCAGCGTTA CACCGAGGCG AGAAACGGCT CGTGTTCTGC
GATTCGCGTC AGCTCGTCGA ACAGCTCGGC GCCGCGTTAC GCATGCGCGG AGTCACCACT
TTCCTGTCGC ATGCCTCGCT GTCGGTGGAC GAGCGCCGTC GCGCCGAGGC GGCCTTTGCC
GAAGCCCGTG ACTGCGTCAT CGTGTCCACA TCCACGTTGG AACTGGGCAT CGACGTCGGC
GACCTCGACC GTGTCATTCA GCTCGACTCG CCCACCACGG TGGCGTCGTT CCTGCAACGG
CTCGGTCGCA CTGGACGGCG TGCGGGCAGC ACACGCAACT GTCTGTTCCT CGCTCTCAGT
CAGGAGTCGT TGCTGTGGGC GGCAGCGCTA TTGGAACTGT GGGGTCGCGG CTATGTGGAA
CCCGTCAAAG CCCCGTTAGA ACCGAGACAC ATCGTCGCCC AGCAAGTGCT GGCTCTATGC
CTGCAGGAAC ATGCCGTGGG CGGCCGATTG TGGACTGAAG CGTGGAACGG TCTCGCACCG
TTCGACCGTA GCGCGGAACC CATTGTGCGC CATCTCGTCG AACAGGGTTA CTTGGACCGG
GACGGCGAAC TGCTCTTTAT CGGCCCCGAA GCCGAACGCC GATTCGGCCA CCGGAACTTT
ATGGACATGA CGGCCGTGTT CACCGCGCCA CCACAGTTCA CCGTGCTGGC TGGACGCCAG
GAGATCGGGC TCATCGATCC GACACTGTTG ACGGAGCGAT CGGAAGGTCC TCGAGTATTG
CTGCTCGGTG GTCGCAGTTG GAAAGTGACG TGGGTCGACT GGAAACGTCG ACGGTGCTTC
GTAGAGGAAA CCAAGCTTAA AGGAAAGGCA CGCTGGCACA CACCCGGCGC AACAGGTCGC
AGTGCGGCTC TCGCCCGTGC AGCACGTGAT GTGTTGCTCG GTGCCACCCC ACCGGTGAAA
CTCACACAAC GTGCCGTCCA AACATTGACG ACACTGCGTG AGAAGCGAAT TCCCACTGTT
GCTTCCGAGG GGCTGGTGAT CACTCGCGAG GGGAGCACGG AGGCAGACGT ACGTTGGTGG
ACCTGGGCGG GCCGCAAAGC CAACGCCACA CTCGCCGCTT CTTTGCCAGA GGTGGTCGAC
GGTCGTTTCG ACGATGTGTC AGTGCGATTG CGTCCCGACC TCACCCCACA ATTGTGGAGA
ACCGCCACAA CCGATGCTGC GCAGAAGCTG TGTTTGCCGG AGATCGACGA TCGTGCACTC
GCCGGGCTGA AATTCAGTGT CGCCCTTCCA CCTCAATTGG CGGTCGACAC CCTGGCCTCA
CGCATGGCTG ATCTCGACAC GGCGGCCACT GTCCTGAATG AGCCCGTTCG GTTCACAATT
CTTGGCTAA
|
|---|
| Protein sequence | MSQALERLHS AVVHHLVNTL GWRSLRPLQQ QAVAPVLDGH DALLLAPTAG GKTEAACFPV
LTAMEQQRWT GLSVLYVCPL KALLNNLLPR LRDYAAWLGR RVELWHGDVP ATARRHILRD
PPDILLTTPE SVEAMLVSAN VEHQRLFGNL RAIVVDEVHA FAGDDRGWHL LAVLERLTVL
AQRPIQRIGL SATVGNPEQL LHWLQGSGRG HRPATVVAPG VHAPSATPQG DIELDYVGSV
DNAATVISAL HRGEKRLVFC DSRQLVEQLG AALRMRGVTT FLSHASLSVD ERRRAEAAFA
EARDCVIVST STLELGIDVG DLDRVIQLDS PTTVASFLQR LGRTGRRAGS TRNCLFLALS
QESLLWAAAL LELWGRGYVE PVKAPLEPRH IVAQQVLALC LQEHAVGGRL WTEAWNGLAP
FDRSAEPIVR HLVEQGYLDR DGELLFIGPE AERRFGHRNF MDMTAVFTAP PQFTVLAGRQ
EIGLIDPTLL TERSEGPRVL LLGGRSWKVT WVDWKRRRCF VEETKLKGKA RWHTPGATGR
SAALARAARD VLLGATPPVK LTQRAVQTLT TLREKRIPTV ASEGLVITRE GSTEADVRWW
TWAGRKANAT LAASLPEVVD GRFDDVSVRL RPDLTPQLWR TATTDAAQKL CLPEIDDRAL
AGLKFSVALP PQLAVDTLAS RMADLDTAAT VLNEPVRFTI LG
|
|---|
| |