Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_04290 |
Symbol | |
ID | 8385767 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 415464 |
End bp | 416366 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644974528 |
Product | pseudouridylate synthase I |
Protein accession | YP_003132332 |
Protein GI | 257054500 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.477492 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCAGGACG GGCCCGCTAC TTCCAACGGG GAGGGCGGGC CCGTTCGTCT CCGCATCGAC CTGAGTTACG ACGGCACGGA CTTCTCAGGA TGGGCGCGCC AGCCGGGACG TCGCACGGTT CAAGGCGTGC TTGAGGATGC CCTGGCCAAG CAGCCCCCAG GAGCCTCGAT AGCCGGCCCA GTAGTGGTAG CAGGCCGTAC CGACGCAGGT GTCCACGCGA TCGGCCAAGT CGTTCACGTG GACGTGACGC GTTTAGCGGG CGAAACGCGT TCCCGGATGC CGATTTCATC GGATGGGCTC CCGGACCTTG ATTGGGCACG TTACCGCTTG AACCGCGTTT TGCCGGCAGA TGTGCGTGTC CTCAGCATTC GCCGGGCCCC TGCGGGATTC GATGCGCGCT TTTCGGCTGT CAAACGTCAT TACCGGTATC AGGTGTCGGA TGCCCCTTGG GGAGTCAGCC CGCTGCGGAG GCGGGACACA TTGGCTTGGC CGCGGCCTTT GTCTGTTGAC GCGATGAACG AGGCAGCATC CTCGCTATTG GGGCTGCACG ATTTCGCTGC GTTCTGCAAG CGACGAGAGG GAGCCACCAC CATTCGTGAG CTCATGGAGC TCCGATGGTG CCGCGTAGAC GAATATGAAC TGCACCTTTC TGTGTCCGCA GATGCGTTCT GCCATTCGAT GGTGCGTAGC CTGGTCGGTG CTCTCCTTTG GGTCGGCGAT GGTCGGCGTG ATGTCGGTTG GCCGTTGGAA GTCCTGCGAA GCCGACAACG AAGCAGTGTT GTCGCGCCCG CGCACGGATT GACTTTGGTC AAAGTCGACT ACCCGCCGGA CGACGAGCTC GCGTCACGTG CGGAGAAGAC GCGCAACATC CGTGACGAGT CCGAATCCTT CCAAAGTGAC TGA
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Protein sequence | MQDGPATSNG EGGPVRLRID LSYDGTDFSG WARQPGRRTV QGVLEDALAK QPPGASIAGP VVVAGRTDAG VHAIGQVVHV DVTRLAGETR SRMPISSDGL PDLDWARYRL NRVLPADVRV LSIRRAPAGF DARFSAVKRH YRYQVSDAPW GVSPLRRRDT LAWPRPLSVD AMNEAASSLL GLHDFAAFCK RREGATTIRE LMELRWCRVD EYELHLSVSA DAFCHSMVRS LVGALLWVGD GRRDVGWPLE VLRSRQRSSV VAPAHGLTLV KVDYPPDDEL ASRAEKTRNI RDESESFQSD
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