| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_01580 |
|---|
| Symbol | |
|---|
| ID | 8385496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 169250 |
|---|
| End bp | 169990 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644974262 |
|---|
| Product | spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase |
|---|
| Protein accession | YP_003132073 |
|---|
| Protein GI | 257054241 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1861] Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0275127 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACATCG TCATTCAGGC AAGGGCGTCG TCGACGCGGT TGCCGGGCAA GGTACTGCGC
CCGCTGGGGG AGGCCGGGGA CTTGTCCGTG CTCGGTTGGG TCGTGCGCGC GGCCCGGCTG
ACGGTGGGTG TGGACAGAGT GGTGGTGGCC ACTTCGGACA ACGCGGACGA TGACGCCGTG
GCCGCCGAGG CGCGGCGATG CGGCGCGGAC GTCGTGCGGG GACCGCTCGA CGACGTGCTG
GCGCGATTCC TCGTGGCCTG CACCGAATAC CCGGCCGACG CGGTGATGCG GCTGACGGCC
GACTGTCCAC TGCACGACCC CGCGTTGCTC GGACAGCTGG TGGCGCTGTG GCGTGCGCAG
CCCGACCTCG ATTACGTGAG CACCACGTTG GTACGGACCT TGCCTCGCGG ATTCGACGCC
GAACTCGTGC GGGTCCCCGT GCTCGTCGAA CAGGGAAGGA TCCCGGTCGG TCCGCACCGC
GAGCACGTGA CCTACGGCGT GAAGAACAGT CCTGACGTGC ATCGTTGTTC GGGCATCGTG
GTGCAACCCC GCGCCGACGA CCTACGCGTC ACACTGGACA CCGAGGACGA CTGGGCGTTG
TTGGAGGCGT TGGTGCGGGA GCTGTCGACC CGCCACGGCG ACGGTCCGTT CGCGTGGCGC
GACGTGGTGG CGGTGTTGCG TTCTCGGCCC GACCTGGTGG CACTCAACGC GCACGTCGAG
CAGAAGAAGG TCACGGGATG A
|
|---|
| Protein sequence | MNIVIQARAS STRLPGKVLR PLGEAGDLSV LGWVVRAARL TVGVDRVVVA TSDNADDDAV
AAEARRCGAD VVRGPLDDVL ARFLVACTEY PADAVMRLTA DCPLHDPALL GQLVALWRAQ
PDLDYVSTTL VRTLPRGFDA ELVRVPVLVE QGRIPVGPHR EHVTYGVKNS PDVHRCSGIV
VQPRADDLRV TLDTEDDWAL LEALVRELST RHGDGPFAWR DVVAVLRSRP DLVALNAHVE
QKKVTG
|
|---|
| |