| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_01010 |
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| Symbol | |
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| ID | 8385439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 101074 |
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| End bp | 102795 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644974205 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_003132016 |
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| Protein GI | 257054184 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.883034 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGGCAA CGTCCGATAC TGAGGCCGTG AAGCCGCCGT CTGCTGCTTC GCGCCGACCG
TGGTATTCCA CGATCGCGCC GCGGGTCTTC TTCCCCGCCG CGGTGATCAT CCTGGTCTTC
GTGGCGGCCG CCGTCATCGC CCCCGACGCG ATGAGCAACG TGATCGGCAC TATCCAGGAA
CAGGTCGTCA GCTCGTTCAG CTGGTACTAC ATGCTGATCG TCTCGGGCTT CGTGCTGTTC
TCGTTGTGGA TCGGCCTGAG CCATTACGGC GACATCAAAT TGGGGCCCGA CGAGGAGGAA
CCCGAGTTCG GCCTCAAGGT ATGGTTCTCG ATGCTGTTCG CGGCCGGTAT GGGTATCGGT
CTGGTCTTCT GGGGCGTGGC CGAGCCGCTG AACCACTACG CCGGTATCCC CAACCGCGCG
ACCGGGATCA CCCAGGACGA AAGCGGTGCG CAGGACGCGC TCGTGCAGAC CTTCCTGCAC
TGGGGACTGC ATCCGTGGGC CATCTACGTG GTCGTCGGTG TGGCCATCGC CTACGCCGTG
CACCGCAAGA AGCGTCCGGT ATCCATCCGG TACGCACTGG AATCGTTGAT CGGCAAGCGC
GTAAACGGCT GGCTCGGCGA CGCCATCGAC ATCGCCGCGG TCGTCGGCAC GTTGTTCGGC
GTGGCGACTT CGCTCGGTCT GGGGGTGCTG CAGATCGGTG CGGGGCTGGA CTTCCTCGAC
ATCGTGTCCG ACCCGGGCAA CCTCACCTAC GTGGTGCTGA TCGGCGTGAT CTCGCTGCTG
GCCATCATCT CGGTGGTCAC CGGCGTGAAG CGGGGCATCA AGTGGCTGTC CAACATCAAC
ATGGGCCTCG CCGGCTTGAT GATGCTGATC GTGCTGGCCT TCGGTCCGAC GTTGTTCATC
TTCAAGGACC TGGTGCAGTC GATCGGCGCG TATCTGCAGA ACCTCGTGGC GATGAGCTTC
AACACCACCG CGTACGAGGG TGAGGACGGC AACGCCTGGC AGGGCTTCTG GACCGCCTTC
TACTGGGGTT GGTGGATCTC GTGGGCGCCC TTCGTCGGCG TGTTCATCGC GCGGATCTCG
CGCGGCCGCA CGGTGCGCGA GTTCGTCGCC GGTGTGCTGC TGGTCCCCAC GGCCGTGACC
ATGCTGTGGT TCACCGTGTT CGGCGGTACC GCGCTCTACC GCGAGTTGTT CGGTGAAGGC
GGTCTGGTGG GCACGGACGC CGACGGCAAC CCCACGGTGG ACACCGAGGC GTCGTTGTTC
GCTGTGCTGG AGGCCCTGCC CGGTGGGGCG GTGCTGTGCG TGGGCGCGGT CATCCTGATC
GTGCTGTTCT TCGTGACCTC GTCCGACTCC GGCTCCCTCG TGGTGACCAT GCTGTCCTCC
GGCGGCGATC CGGAACCGCC GAAGTGGCAC CGGGTGTTCT GGGGCGTGCT GGAAGGCGCC
GTCGCCGTCG CGCTGCTGTT CGCCGGCGGA TTGAGCGCGC TGCAGACGGT GGCGATCCTC
ATCGCCTTGC CGTTCAGTGT CGTGATGCTC GGCATGTGCG CGTCGATCAT CCGGGACTTC
AGAGCGGAAC GTGCGGCGAT GCTCCGGGCG CAACGCAAGC TGCAACGTGA GCAGCTCACG
GAGCACGTCA CGAACAGTCT GATCGACGAG GGGTTGGTGG ACCCCAACGG CGCGAACGGG
TCGGGGGACG TCGAGCGGGG CGGGGCGACC GTGTCGCCCT GA
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| Protein sequence | MTATSDTEAV KPPSAASRRP WYSTIAPRVF FPAAVIILVF VAAAVIAPDA MSNVIGTIQE
QVVSSFSWYY MLIVSGFVLF SLWIGLSHYG DIKLGPDEEE PEFGLKVWFS MLFAAGMGIG
LVFWGVAEPL NHYAGIPNRA TGITQDESGA QDALVQTFLH WGLHPWAIYV VVGVAIAYAV
HRKKRPVSIR YALESLIGKR VNGWLGDAID IAAVVGTLFG VATSLGLGVL QIGAGLDFLD
IVSDPGNLTY VVLIGVISLL AIISVVTGVK RGIKWLSNIN MGLAGLMMLI VLAFGPTLFI
FKDLVQSIGA YLQNLVAMSF NTTAYEGEDG NAWQGFWTAF YWGWWISWAP FVGVFIARIS
RGRTVREFVA GVLLVPTAVT MLWFTVFGGT ALYRELFGEG GLVGTDADGN PTVDTEASLF
AVLEALPGGA VLCVGAVILI VLFFVTSSDS GSLVVTMLSS GGDPEPPKWH RVFWGVLEGA
VAVALLFAGG LSALQTVAIL IALPFSVVML GMCASIIRDF RAERAAMLRA QRKLQREQLT
EHVTNSLIDE GLVDPNGANG SGDVERGGAT VSP
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