Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_00560 |
Symbol | |
ID | 8385394 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 54492 |
End bp | 55862 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644974160 |
Product | Helix-turn-helix protein |
Protein accession | YP_003131972 |
Protein GI | 257054140 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.95745 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGCCA ACGAGAACAC GACGCAGAGT CGCATCAATC CCGCGATTTG GGAAGCCCGC GAAATGCGTG ACGCGCTGGC GAACCGCAAC ATCAGTGAGG TTTACCGGCA ACTCCGGATG CACGGCATCT CGCAACGCCA GATCGCCGCG ATGACCGGCC AATCACAGTC CGAGGTGTCG GAGATCCTCA AGGGTCGCCA GGTGATGGCC TACGACGTCC TGTCTCGTAT CGCCAAGGGC CTGCGCATCC CGAGGGGCTA CATGGGTCTC GCCTACGACG AGACCACAAG AAATCAGGTT GTCGGCGACG CCGACGAGCA GCAAGCTGAG GAGGACGAGT CCGTGAAACG ACGGAAGTTC CTCGCGCACG CCGCCCAGGT CACGATGGGG GCCGCGGTTT TCGGTCCCGC CTCGACGGCA TGGGCGTCGA GCCCCACACA GACACCCGCC CCGGGACGCA TCGGGATGAC CGATGTCCGA CAGGTGGAAG CGGCAACCCG AGCGCTCAGA GCGCTGGATT ACCAGTACGG GGGCGGCTTC TGTCGGGATG CGGTGGTCGC GCAGTTGTCG TGGGGGCAGC AGATGCTCCA GGCGAGCGGC TCCGAACAGG TCAAGTCACG GCTGTACGTG GCGTTGGCCG ACCTCCACAG CCTTGCGGGT TGGACGTCGT TCGACATCGA CCTCGTCGAC TCCGCGCGAA ACCATTTCGC CCAGGCGCTC GAACTGGCGA AACAGGGGGA CAACCACCCG CTCGTCGCCA ACATCCTGTA CCGGATGGGA CGTGTCTACT TGCATCAGGA CGCGCCCAAC GAAGCGTTGA AGTTGTTCCA ATTAGGACAG CTCGCGGCAC AGGATTCCGG TTCGGAACTC GCGGTCGCCG TGTTGTGCGC CAACGAGGCG TGGGCGTACG CGATGATGGG CAACGCCGAA CAGGCCATGA AGCTGCTCGG CCGGACGAGG GACGAGTTCG CTCGTGCCGA CCTCGCCAAC GCCGAGTCGT GGGTGAAGTT CTTCGACGAG ACCGACGTGT ACGCGATGAT CGGGACCGTA CACACGGAAC TGGCCCAGAA CGTCGACGTC TCGCACACCC GTTACGCCAT TCCGGCGCTG CGCAGGGCCA CGGAGGCCTA CGGCGGTGAC ATGGCCCGCA GCAAGACGTT CAGCCTCGGC ATGCTGGCCA CCAACCACAT GCTGGAAGGC GACATCGACT ACGGGGCGAA GGTCGGTGGC AAGGCGCTGG ACTGCGCGGA GGGACTGAAG TCCGCGCGGG TGAAGAAGCG CATGGAGCCG TTGCGGCAGG AGGCGTTGCG GCGCAGTAAC AACAGCGACG CGCGCGAACT CGCCGAGCGG ATGAACGAGT TCTTCTCCTG A
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Protein sequence | MKANENTTQS RINPAIWEAR EMRDALANRN ISEVYRQLRM HGISQRQIAA MTGQSQSEVS EILKGRQVMA YDVLSRIAKG LRIPRGYMGL AYDETTRNQV VGDADEQQAE EDESVKRRKF LAHAAQVTMG AAVFGPASTA WASSPTQTPA PGRIGMTDVR QVEAATRALR ALDYQYGGGF CRDAVVAQLS WGQQMLQASG SEQVKSRLYV ALADLHSLAG WTSFDIDLVD SARNHFAQAL ELAKQGDNHP LVANILYRMG RVYLHQDAPN EALKLFQLGQ LAAQDSGSEL AVAVLCANEA WAYAMMGNAE QAMKLLGRTR DEFARADLAN AESWVKFFDE TDVYAMIGTV HTELAQNVDV SHTRYAIPAL RRATEAYGGD MARSKTFSLG MLATNHMLEG DIDYGAKVGG KALDCAEGLK SARVKKRMEP LRQEALRRSN NSDARELAER MNEFFS
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