Gene Svir_00560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_00560 
Symbol 
ID8385394 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp54492 
End bp55862 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content64% 
IMG OID644974160 
ProductHelix-turn-helix protein 
Protein accessionYP_003131972 
Protein GI257054140 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.95745 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGCCA ACGAGAACAC GACGCAGAGT CGCATCAATC CCGCGATTTG GGAAGCCCGC 
GAAATGCGTG ACGCGCTGGC GAACCGCAAC ATCAGTGAGG TTTACCGGCA ACTCCGGATG
CACGGCATCT CGCAACGCCA GATCGCCGCG ATGACCGGCC AATCACAGTC CGAGGTGTCG
GAGATCCTCA AGGGTCGCCA GGTGATGGCC TACGACGTCC TGTCTCGTAT CGCCAAGGGC
CTGCGCATCC CGAGGGGCTA CATGGGTCTC GCCTACGACG AGACCACAAG AAATCAGGTT
GTCGGCGACG CCGACGAGCA GCAAGCTGAG GAGGACGAGT CCGTGAAACG ACGGAAGTTC
CTCGCGCACG CCGCCCAGGT CACGATGGGG GCCGCGGTTT TCGGTCCCGC CTCGACGGCA
TGGGCGTCGA GCCCCACACA GACACCCGCC CCGGGACGCA TCGGGATGAC CGATGTCCGA
CAGGTGGAAG CGGCAACCCG AGCGCTCAGA GCGCTGGATT ACCAGTACGG GGGCGGCTTC
TGTCGGGATG CGGTGGTCGC GCAGTTGTCG TGGGGGCAGC AGATGCTCCA GGCGAGCGGC
TCCGAACAGG TCAAGTCACG GCTGTACGTG GCGTTGGCCG ACCTCCACAG CCTTGCGGGT
TGGACGTCGT TCGACATCGA CCTCGTCGAC TCCGCGCGAA ACCATTTCGC CCAGGCGCTC
GAACTGGCGA AACAGGGGGA CAACCACCCG CTCGTCGCCA ACATCCTGTA CCGGATGGGA
CGTGTCTACT TGCATCAGGA CGCGCCCAAC GAAGCGTTGA AGTTGTTCCA ATTAGGACAG
CTCGCGGCAC AGGATTCCGG TTCGGAACTC GCGGTCGCCG TGTTGTGCGC CAACGAGGCG
TGGGCGTACG CGATGATGGG CAACGCCGAA CAGGCCATGA AGCTGCTCGG CCGGACGAGG
GACGAGTTCG CTCGTGCCGA CCTCGCCAAC GCCGAGTCGT GGGTGAAGTT CTTCGACGAG
ACCGACGTGT ACGCGATGAT CGGGACCGTA CACACGGAAC TGGCCCAGAA CGTCGACGTC
TCGCACACCC GTTACGCCAT TCCGGCGCTG CGCAGGGCCA CGGAGGCCTA CGGCGGTGAC
ATGGCCCGCA GCAAGACGTT CAGCCTCGGC ATGCTGGCCA CCAACCACAT GCTGGAAGGC
GACATCGACT ACGGGGCGAA GGTCGGTGGC AAGGCGCTGG ACTGCGCGGA GGGACTGAAG
TCCGCGCGGG TGAAGAAGCG CATGGAGCCG TTGCGGCAGG AGGCGTTGCG GCGCAGTAAC
AACAGCGACG CGCGCGAACT CGCCGAGCGG ATGAACGAGT TCTTCTCCTG A
 
Protein sequence
MKANENTTQS RINPAIWEAR EMRDALANRN ISEVYRQLRM HGISQRQIAA MTGQSQSEVS 
EILKGRQVMA YDVLSRIAKG LRIPRGYMGL AYDETTRNQV VGDADEQQAE EDESVKRRKF
LAHAAQVTMG AAVFGPASTA WASSPTQTPA PGRIGMTDVR QVEAATRALR ALDYQYGGGF
CRDAVVAQLS WGQQMLQASG SEQVKSRLYV ALADLHSLAG WTSFDIDLVD SARNHFAQAL
ELAKQGDNHP LVANILYRMG RVYLHQDAPN EALKLFQLGQ LAAQDSGSEL AVAVLCANEA
WAYAMMGNAE QAMKLLGRTR DEFARADLAN AESWVKFFDE TDVYAMIGTV HTELAQNVDV
SHTRYAIPAL RRATEAYGGD MARSKTFSLG MLATNHMLEG DIDYGAKVGG KALDCAEGLK
SARVKKRMEP LRQEALRRSN NSDARELAER MNEFFS