| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_2665 |
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| Symbol | truD |
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| ID | 8384970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhabdus utahensis DSM 12940 |
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| Kingdom | Archaea |
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| Replicon accession | NC_013158 |
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| Strand | + |
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| Start bp | 2736794 |
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| End bp | 2738152 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644973739 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_003131559 |
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| Protein GI | 257053726 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACAGG CACACCCCGT CGAGCAAGCG GTCGGCATGG AGTACTACGT CAGCGACAGC
GACGGCGTCG GCGGGCACCT TCGTCGGGAG CCCGCGGCCT TCGGCGTCCG TGAGGTCGAA
GCCTTCCAGG TCGAGCCCAT CGACGCCAAG CAGGGCGCGT ACCCACACGT CGTCTTCCGG
GCGACGCTCG CGGGCTGGGA CACAAACGAC TTCGCGAGCG TCCTCTCGGA TCACCTGGGG
ATCAGCCGCG AACGCGTCTC CTGGGCCGGG ACGAAGGACA AATACGCCGA GACGACTCAG
CTGTTCTCCG TCGCGAAAGT CGACCCCGCC GATCTCGAAA CGATCGACCT CTCGAACGTC
GAGATCGAGG TTCTGGGCCG GAGCGGCCGG CCGATCCTCT TTGGCGATCT GGCGGGCAAC
GCCTTCGAGA TCGAGATCAG CGAACCCGAC GCGCCCGGAA ATCTCGATGG AGTTCTCGAC
GAACTCGCCG CGTTCGCCGG CAGCGCGTCC GGCGGTGGCG AGGACGACGG CTCGATCCGC
ATTGGCGTCC CCAACTACTT CGGCCAGCAA CGCTTCGGCA GCCAGCGCCC GGTCACCCAC
GAGGTCGGCC TCGCCGTCGC CCGCGGCGGC TGGACGGACG CCGTTCTCGC GTACGTCGGG
AATCCACACG ACCGCGAGCG CGAGGATACT CGCAAAGCCC GGAAGTACGT CACGGAAACC
GAAGACTGGG AAGGCGCGCT CGATCGACTC CCCAAGCGCC TGGGCTACGA ACGGTCGATG
TGCCACCGCC TCGTCGAGAA CGGGGCCGAC GACCCCGAAG ACTTCCAAGA AGCGCTGGAG
GCGGTCCCGA CCAACCTCCA GCAACTGTTC GTCAACGCTG CCCAGTCCTA CGCGTTCAAT
CGGATTCTCT CGGCACGATT GGAGCGCGGG CTTCCCTTCG ACGAACCGGT GGCCGGCGAC
GTGGTTTGCT TCGCTGACAG CGACGCCCCG GAGGAGATCG AACTGCCGGA TACCGGCCGG
ACGCAGCGTG TAACCGCGGA CAACGTCGGG ACGGTTCGCC GCCACTGCGA GCGCGGGCGG
GCGTTCGTGA CCGCGCCGCT GCTCGGGACC GACAGTGAAC TGGCGGATGG TGAGCCGGGC
GAGATCGAAC GGGCGGTCTT TGAGGATCTC GGGATCGGTC CGGCGGACTT CGACCTTCCG
GGGGAGTTCC ACTCCGAGGG GACGCGACGG GCGATCCTCC TGCGGACCGA CATCGCCGTC
GAACGGGATC CACTGACGCT CTCGTTTGCG CTCCCGAAAG GCTCCTATGC GACGGTCGTC
TTGCGGGAGA TCACGAAAGC AGATCCGGCG GACCTTTGA
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| Protein sequence | MRQAHPVEQA VGMEYYVSDS DGVGGHLRRE PAAFGVREVE AFQVEPIDAK QGAYPHVVFR
ATLAGWDTND FASVLSDHLG ISRERVSWAG TKDKYAETTQ LFSVAKVDPA DLETIDLSNV
EIEVLGRSGR PILFGDLAGN AFEIEISEPD APGNLDGVLD ELAAFAGSAS GGGEDDGSIR
IGVPNYFGQQ RFGSQRPVTH EVGLAVARGG WTDAVLAYVG NPHDREREDT RKARKYVTET
EDWEGALDRL PKRLGYERSM CHRLVENGAD DPEDFQEALE AVPTNLQQLF VNAAQSYAFN
RILSARLERG LPFDEPVAGD VVCFADSDAP EEIELPDTGR TQRVTADNVG TVRRHCERGR
AFVTAPLLGT DSELADGEPG EIERAVFEDL GIGPADFDLP GEFHSEGTRR AILLRTDIAV
ERDPLTLSFA LPKGSYATVV LREITKADPA DL
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