| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_2487 |
|---|
| Symbol | |
|---|
| ID | 8384789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 2559831 |
|---|
| End bp | 2561267 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644973561 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_003131384 |
|---|
| Protein GI | 257053551 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.316472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAG AATCAGTGCT ACGGAACCAG ATCGACGATG TCCCACTTTC GACGCTGCTC
GCCGGGACGA TCGTCGGCGT CTATCTGCTT GTCATTGCGG GGGCAACCGC CTCGATCGCC
GACGCGGCGG CGACCTGCTC GACCTGGCCG GCCTGCCAGC TTCCCTCTAC GGAGTCGCCA
GCGCTTGCCG TCGCCTGGGG CCATCGGGTG CTTGCGGCAA CCGTCGGCGT TGCAGTACTA
CTGAGTGCGA TCGTCGGCTT CCGGCGCGTC TCGGATCGCC GGGTCCGGGC CGCTCTTGCC
GTCGCGGTCG TCCTCTTTCC AGTCCAGGTC GCGCTGGGTG CCGTGGTGAC GGTCACCGGG
GCCGCCGGAA TCTCGCCGGC CGTCCACCTC GGCGTGGCGA TGAGCATCTT CGGATCGCTC
GTGCTCGCGC TGGCCTGGCA TCTCGAAACG ATGTACGGCG ACCCGACTGA GGAACCAGAT
TCGGGCGTGA CGACCCAACC AGAGCCGGTC GAGACAGCCG TCGATGACGA CCACCCGTCG
ACCCGGCGTG ACCGAGGACC GGCGGGAGAG ATGCTGGCGA CGCTGCAAGC CTACGTCCGG
TTGACCAAGC CACGCCTGAT GTGGTTGCTG TGTCTGGTTG CCTCGGCGGG CATGGCCCTG
GCGACGACGG GCGGACGGAC GCTGACGGTC GAGACGATCC TGGCAACGCT GTCCGGCGGT
GTGCTGGCGA TCGGTGCCAG TGGCACGTTC AATCACGTCC TCGAACGTGA CGTCGACAAG
CGGATGCAGC GCACGTCCGA CCGACCGGTG GTGACCGACC GCATCCCGAT CCGGAACGCG
GTCGCGTTCG GACTACTCCT GTCTGCACTC TCGCTTGCCA TCTTCGCCAC GGTCAACGTG
TTGGCTGCCG CACTGGGCCT CTCGGCGATC CTCTTCTACA GCGTCGTCTA CACCCTGTTG
CTCAAGCCAA ACACCGTCCA GAACACCGTC ATCGGCGGGT TCGCCGGCGC GCTGCCGGCA
CTCATCGGCT GGGTCGCCGT CACCGGGACG TTCGGGGTTC CAGGCCTCGC GCTGGCGGGA
ATCGTCTTCC TGTGGACGCC GGCGCACTTC TACAACCTGG CGCTGGCCTA CCAGGACGAC
TACGCACGCG GCGGCTTCCC GATGATGCCA GTCGTCCGCG GCGAGACGGT GACGCGCAAG
CACATCCTGC TGTACCTCGG TGCGACGCTG TTGGCCGCAA GCGGACTGGC GACGCTGGCG
AACCTCGGCG TCCTCTATGG AGCCACGGTC TCGATTGTCG GGGCCATCTT CCTGTGGGCC
GTTCTGGTAC TGCACCGTGA GCGAACGACC GACGCGGCCT TCCGGGCCTT CCACGCCTCG
AACGCCTTCC TCGGGGCCCT GCTGGTCGCA GTCGTGATCG ACGCGATGGC CGTATGA
|
|---|
| Protein sequence | MKRESVLRNQ IDDVPLSTLL AGTIVGVYLL VIAGATASIA DAAATCSTWP ACQLPSTESP
ALAVAWGHRV LAATVGVAVL LSAIVGFRRV SDRRVRAALA VAVVLFPVQV ALGAVVTVTG
AAGISPAVHL GVAMSIFGSL VLALAWHLET MYGDPTEEPD SGVTTQPEPV ETAVDDDHPS
TRRDRGPAGE MLATLQAYVR LTKPRLMWLL CLVASAGMAL ATTGGRTLTV ETILATLSGG
VLAIGASGTF NHVLERDVDK RMQRTSDRPV VTDRIPIRNA VAFGLLLSAL SLAIFATVNV
LAAALGLSAI LFYSVVYTLL LKPNTVQNTV IGGFAGALPA LIGWVAVTGT FGVPGLALAG
IVFLWTPAHF YNLALAYQDD YARGGFPMMP VVRGETVTRK HILLYLGATL LAASGLATLA
NLGVLYGATV SIVGAIFLWA VLVLHRERTT DAAFRAFHAS NAFLGALLVA VVIDAMAV
|
|---|
| |