| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_2423 |
|---|
| Symbol | |
|---|
| ID | 8384724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 2490689 |
|---|
| End bp | 2492788 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644973498 |
|---|
| Product | glycoside hydrolase family 43 |
|---|
| Protein accession | YP_003131322 |
|---|
| Protein GI | 257053489 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGG GGGATGACAC GCACTCACTG AATCGACGTC ACGTACTCAA ATCGATCGGG
GTTGGGGCGC TCGGTACCAC GGGGATACTC GGGACGTCCG GATCAGCGAT AGCCGACAAC
GGCGGAACCC ACTACTCGAA TCCGCTGTAC GGGCCGGACT TCGCGGACCC CACGATCCAC
CGTGCCGAGG ACGGAACGTG GTGGGCCTAC GCCTCGAACA TGAGCTATAT CGAGGATAGC
GACGAGAGGT TGATACCGAT CCTCTCCTCG CCGGACCTCG TCAACTGGAC GTACGAGGGC
GAGGCGTTCG ACTCCCGACC CGGCTGGCTG TACGGGTCGA TCTGGGCACC CGATGTCCAC
TACCACGACG GCCAGTGGGT GCTGTTTTAC GCCCTCTGGC CGCGCGGAGA CGACGACAGT
CAGGTGCCCG GCATCGGCGT GGCCACGTCG GAGACGCCCG ACGGCCCGTT CACGGACCAT
GGGGAGATCC TCTCCAACCC GGATCACCCC TATCCTGGCA ACACGATCGA CCCGTACTTC
GCCTATCACA ACGGGACACC GTACCTCTTC TGGGCTAACT TTGCTGGCAT TAACGTGGTG
GAACTCACCG AGGACCTGCA GGACTACCAG CCCGGGACGT TCAATCAGAT CGCCGGAAGC
GCCTACGAGG GGCCGGCAAT CTTCCAGCGG GGAGACTACT GGTACGTCTT TGGCTCCACC
GGCGATTGCT GTGATGGGTT CGACAGCACG TACGAGGTCG AGGTCGGTCG ATCAGAGAAC
CTCCTCGGCC CGTACCATGA CCGGGACGGC ACCCCGATGC TCGAGCGTGA CGAGTGGAAC
GCGGGGCCGA CTCACCTCGG TGACAACGAT CGCTTCGTCG GGCCGGGCCA CGGTGACGTG
ACGGTCGACG ACGACGGCAC CTACTGGTTC GTCTATCACG CTTACGACAC CGAAGGCCCG
GAGTTCGTCG ACAACGGCTG GCCGCCGGCA CGGCAGCTGT TCGTCGATCC GATCCAATGG
GAGGACGGGT GGCCCATCAT CGGCTGCGAC GGAACGCCGT CCAGCGAGAT GGCCGTCCCC
GGCGAAGGAG GCTACTGCAG TGGCGGTGAC GACGGGACTG GTGATGGCGG TGGCGTTGGC
GATGACGTTG GCGATGGGAC TGGCGACGGA TACGAGACGT GGACCGACAC CGACGATCCG
TACTATGCGA CGCTCGTCAG TGATCTCACG GGGTACGACC TCCCCAGCGC GGGCCAGTTC
GTCAACGGTA CTGACGAGTC GGTCGTCTGG GACACCTACG AGATCGACGG CGGCAACGCC
GACCGCCTCG AGCGGTCGTC ACTGGCGGTC GGCGACGAGG TACCGTTCTC GGAGGCGGCC
CGCTTCTCGG TGACCGATCC ACCGGAGAAT CCGTGGGGGA TCACCCTCAA GTCCTTCGGC
GAGCGCGAAC TGGAGCGCGG GCAAGTCCTC CTCGGTGTCG CGTACATGCG CACGCCCGGA
GAGGAAGCGT CGGTGACCTA CAAGTCGACG GCGTCGACCA ATACGCCGGA CAACTACGTG
ACCGGGGCCC AGCCGCCACT GGGTGCCGAG TGGCAGCGGT ATTACTTCCC GATCGAGTTC
GGCGTTTCGG CCGCCCCCGG CGAGTGGTGG ACCGAGATCT GGCTCGGTGC CGCGGCCCAG
ACGGTCGACA TCGGCGGCCT CGCAGTGATC GACTTTGCCG AGGGGGTGCG AGCCCACGAC
CTCCCAGTCC GGGCGGAGAC CGGAGAGACG GCGGTCGGAA CGGATGGCGA CACCGACACT
GAGACGGACA CGTCCGGCGA GAGCGAGGGA GAGCAGGATG ACAGCGAAGC CGGCGGTAGC
GAGGGGACGC CAGCCGGTGG GCTGCCCGGC GGTGAGGGGC CGTCCCAGGA TCTGGACGGC
GATGGCCTGC ATGAAGACGT CAACGGCGAC GGCACCGTCG ACGTCAGCGA TGTCCGGTCG
CTGTTGACCA ACGTCAACAG CGAGGTGGTC CAGAAAAACG CCGACGCCTA CGACTTCGAC
GGCGACGGCG GTGTCGACGT CGGCGACGTA CTCGCGCTCT ACCGGCGCAT CTATCAGTAA
|
|---|
| Protein sequence | MTAGDDTHSL NRRHVLKSIG VGALGTTGIL GTSGSAIADN GGTHYSNPLY GPDFADPTIH
RAEDGTWWAY ASNMSYIEDS DERLIPILSS PDLVNWTYEG EAFDSRPGWL YGSIWAPDVH
YHDGQWVLFY ALWPRGDDDS QVPGIGVATS ETPDGPFTDH GEILSNPDHP YPGNTIDPYF
AYHNGTPYLF WANFAGINVV ELTEDLQDYQ PGTFNQIAGS AYEGPAIFQR GDYWYVFGST
GDCCDGFDST YEVEVGRSEN LLGPYHDRDG TPMLERDEWN AGPTHLGDND RFVGPGHGDV
TVDDDGTYWF VYHAYDTEGP EFVDNGWPPA RQLFVDPIQW EDGWPIIGCD GTPSSEMAVP
GEGGYCSGGD DGTGDGGGVG DDVGDGTGDG YETWTDTDDP YYATLVSDLT GYDLPSAGQF
VNGTDESVVW DTYEIDGGNA DRLERSSLAV GDEVPFSEAA RFSVTDPPEN PWGITLKSFG
ERELERGQVL LGVAYMRTPG EEASVTYKST ASTNTPDNYV TGAQPPLGAE WQRYYFPIEF
GVSAAPGEWW TEIWLGAAAQ TVDIGGLAVI DFAEGVRAHD LPVRAETGET AVGTDGDTDT
ETDTSGESEG EQDDSEAGGS EGTPAGGLPG GEGPSQDLDG DGLHEDVNGD GTVDVSDVRS
LLTNVNSEVV QKNADAYDFD GDGGVDVGDV LALYRRIYQ
|
|---|
| |