Gene Huta_1941 details

Gene Information

• Locus tag: Huta_1941
• ID: 8384234
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhabdus utahensis DSM 12940
• Kingdom: Archaea
• Replicon accession: NC_013158
• Strand: -
• Start bp: 1964531
• End bp: 1966402
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644973011
• Product: TrkA-C domain protein
• Protein accession: YP_003130843
• Protein GI: 257053010
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG0471] Di- and tricarboxylate transporters

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGATCG TCTTCGCGAT CATCCTCGCT GCACTCGTGT TGTTCGCCAC GGAGGCCGTC 
CCGGTCGACG TCACCGCCAT CGGGATCATG ATCGCACTGC TGGTCGTCGA ACCCGTCTCG 
ACGATGCTCG TCGAGTGGGG CGTCCTCGAG TCGGCCGTGT ACGTCCTGCG CGCGCCGGGC 
AGCGAGGTGA CGGCCGTCGA GCGCGGGCTC TCAGGATTCG CCAGCGTCGC GACGATCACC 
GTGCTGGCGA TGTTCATCCT CAGCGCCGGC GTCCGACGGA CCGGCGTGAT CCAGATCCTC 
GGCCGGAAAG TCGGGGCGTT CACCGGCGAG GACGAAACCC GCCAGTTGGG CGCGACCGTC 
GGGATCGTCA GCCCGATCTC GGGGTTCATC AACAACACCG CCGCGGTCGC CATCCTCCTG 
CCGATGGTGA CTGATCTCGC CGAGAAAGGC AAGACCTCGC CCTCGAAGCT CCTCCTGCCG 
CTGTCGTATG CCTCGATGTT CGGCGGGACG CTCACGCTGA TCGGGACCTC GACGAACATC 
CTCGCCAGCG ACCTCTCGGC CCGGCTGGGC CGCGATCTCG GCATTCCGGA GCTTCACGCC 
TTCTCGATGT TCGAGTTTAC CCACCTCGGC GTGATCATGA TGGCCGTCGG GCTGGTGTAT 
CTCATGACGA TCGGGCGACA ACTCGTCCCA GCCCGGATCA AACCCGCCGA GGACCTCACC 
AGCGAGTACG ACATGGCCGA ATACCTGACC GAGGTCGTCG TCCGCGATGA TTCGCCGGTC 
GTCGGCCAGC GCGTCGGTGA GGCCCTCGAG GGCACGGACT TCGATGTCGA CGTCGTCCAG 
TTGATCCGGG AGGACGCGGT CTTTCTGGAG CCACTGGGCC AGAAGGTGAT CCAGGCCGGC 
GACGTCTTCG CGCTCCGGAC CGATCGGGAC ACCCTCGTGG AGCTCATGGA CGTCGACGGG 
TTCGACCTGC TGGGCGACGT GGCCGTCACT GACACCGAAT TGGAGGCCCC CGAGGAAGGC 
CACAACCTGG TCGAGGTCGT CGTCGCCCCC GGATCGTTCC TGGTCGGCGA AACGCTCGCG 
AGCGCGAACT TCCGGCAACG CTACGACACG ACCGTGCTCG CCCTGCGCCG CGGCGGGGCC 
GTCATCCGCG ACCGGATGGA TCGAACGCGA CTCCGGGTCG GCGACACCCT GCTCGTCCAG 
GGGGCGACCG ACAGCATCGA CCGCCTCAAC AACAACCGCA ACTTCATCGT CGCCCAGGAG 
GTCGACCGAC CCGACTACCG CGAGTCGAAG ATCCCCGTCG CCATCGGGAT CGTCGCCGCC 
GTCGTCGGCC TGGCGGCACT GACCCCGATC AACATCGCCG TGGCGGCGCT GGCTGGCGCG 
CTCGGGATGG TACTCACCGG CTGTCTGAAA CCCGCCGAGA TGTACGATGC CGTCGAGTGG 
GACGTCATCT TCTTGCTCGC GGGCGTCATT CCCCTCGGGA TCGCCCTGGA GGTGACCGGC 
GGCGCGGCGC TGCTCGCCGA CGGGATCGTC GCCGTTGCCC CCTCGCTGCC GCCCATCGTC 
GTCCTCGGGT TGATGTACGT CGTGACGGCA CTGCTGACAA ACATCATTTC GAACAACGCG 
AGCGTGGTGT TGATGATCCC CGTCGCCGTC GAGGCGGCCG TCGCGCTCGG AGCCAATCCC 
TTCTCGTTCG TGCTCTCGGT GACCTTCGCC GCCTCGACGG CGTTCATGAC ACCCATCGGC 
TACCAGACGA ACCTCTTCGT CTACGGGCCC GGCGGCTACG AGTTCATGGA CTACGTCAAG 
GCCGGTGCGC CCCTGCAAGC GATCTTCGCC GTCGTCACGA CGCTCGGCAT CGCCCTTTTC 
TGGGGACTGT AA 

 

Protein sequence

MVIVFAIILA ALVLFATEAV PVDVTAIGIM IALLVVEPVS TMLVEWGVLE SAVYVLRAPG 
SEVTAVERGL SGFASVATIT VLAMFILSAG VRRTGVIQIL GRKVGAFTGE DETRQLGATV 
GIVSPISGFI NNTAAVAILL PMVTDLAEKG KTSPSKLLLP LSYASMFGGT LTLIGTSTNI 
LASDLSARLG RDLGIPELHA FSMFEFTHLG VIMMAVGLVY LMTIGRQLVP ARIKPAEDLT 
SEYDMAEYLT EVVVRDDSPV VGQRVGEALE GTDFDVDVVQ LIREDAVFLE PLGQKVIQAG 
DVFALRTDRD TLVELMDVDG FDLLGDVAVT DTELEAPEEG HNLVEVVVAP GSFLVGETLA 
SANFRQRYDT TVLALRRGGA VIRDRMDRTR LRVGDTLLVQ GATDSIDRLN NNRNFIVAQE 
VDRPDYRESK IPVAIGIVAA VVGLAALTPI NIAVAALAGA LGMVLTGCLK PAEMYDAVEW 
DVIFLLAGVI PLGIALEVTG GAALLADGIV AVAPSLPPIV VLGLMYVVTA LLTNIISNNA 
SVVLMIPVAV EAAVALGANP FSFVLSVTFA ASTAFMTPIG YQTNLFVYGP GGYEFMDYVK 
AGAPLQAIFA VVTTLGIALF WGL