Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Huta_1644 |
Symbol | |
ID | 8383924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halorhabdus utahensis DSM 12940 |
Kingdom | Archaea |
Replicon accession | NC_013158 |
Strand | - |
Start bp | 1626047 |
End bp | 1628509 |
Gene Length | 2463 bp |
Protein Length | 820 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644972706 |
Product | PKD domain containing protein |
Protein accession | YP_003130551 |
Protein GI | 257052718 |
COG category | [R] General function prediction only |
COG ID | [COG3291] FOG: PKD repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGACGG CAGGACTCGT CGCGGTCGTA CTACTTGGGT TATGTGCAGG CGGGGCACTG GTCGACGGGG CAGTGGCGAG CGATACTAGT ACCACGACAG ATGGAACGTT TGACCAGGGT ATCGCTCTCA ACGAAACGAT CGAGAGCGAA CTCGACGCCG GTGACCGATT TGATGAAGAG ATGGCGGGTC ATCACGAGAA CTACACCTTC TATGCGGAGA GTGGTGACGT GATTTCAGCG GAGATGCGTC CTGACGGAAG CAATGGTCAC GCTACCGATG CACACGCCGC ACAGTTGAGG CTATACGCAC CGAACGGTAC CGAGGTCTTC GGAAGCTATA ATGACGTACA AGGATCAGCA CAGCTAGAAT CCGTTTCACT CGATGCTACC GGGCAGTACA CCTTGATTGC GACGACGAAC GATATCGGTG CGGTTGGTTC CTATTCTGAC GATGTCTACG ATGACGAGAC TGCTGCTCGG ACGGATACGT TCGAGTATCA ACTTCGACTG TATGAGGGAC TGGGCCCCGA TCGAGCGTTA AATATCGGTG AAAATATCAC AGACTCAGTC TCGGAAGCCG ATAATTATCT CGACGATCAA GCGGGCTATT ACGACGCATA TACGTTTGAG GGACAAACTG GACAAACCAT CTCAGCAGAA CTGCGGCCCA ACGGGAGTAG TGGTCACGCT ACCGCTGCAC ACGCCGCACA GTTGAGGCTA TACGCACCGA ACGGTACCGA GGTCTTCGGA AGCTATAATG ACGTACAAGG ATCAGCACAG CTAGAATCCG TTTCACTCGA TGCTACCGGG CAGTACACCT TGATTGCGAC GACGAACGAT ATCGGTGCGG TTGGTTCCTA TTCTGACGAT GTCTACGATG ACGAGACTGC TGCTCGGACG GATACGTTCG AGTATCAACT TCGACTGTAT GAGGGACTGG GCCCCGATCG AGCGTTAAAT ATCGGTGAAA ATATCACAGA CTCAGTCTCG GAAGCCGATA ATTATCTCGA CGATCAAGCG GGCTATTACG ACGCATATAC GTTTGAGGGA GAGCGGGGAA AGACCCTGAA TTTCGAGATG CGGGTCAATC AGCCGACTAC AAAGGCCGCA CAGTTGAGGC TATACGCACC GAACGGTACC GAGGTCTTCG GAAGCTATAA TGACGTACAA GGATCAGCAC AGCTAGAATC CGTTTCACTC GATGCTACCG GGCAGTACAC CTTGATTGCG ACGACGAACG ATATCGGTGC GGTTGGTTCC TATTCTGACG ATGTCTACGA TGACGAGACT GCTGCTCGGA CGGATACGTT CCGCTATCAA CTCCGGGCCT ACGAGCTCGG TGCCGACGCG CCGGTTCTGA CAACCGGCAC GTCGCTTACG GGTGCGCTCT CAGTACGTGA TAATTACCTT GATAAGACCG ACGGCTTCTT CGATCTCTAT CACGTGTCAG CGACTTCCAG CTCGGAACTC ACCGCAACAG TGATAGTCGA TAATCCAACT GATCATGCAG CACGAGTCGC AGTCTATGAT AATGACGGGT CGATAGTCGA CAGGAGTTAT AATAACGATG GAGGTGGCGT GACGCTGGAT TTCTCGCCCG ATACGACCGG CGGTTACTAC CTTGCAGTGA CCACGGAACC CGATGCATCA ACGTACGGAT CGACTCGGAA GGGATTACGG GATACGTTCA GGTATCAGCT TACCATCGAT GGGCCCGAAA ACAGTCCACC GATTGTAACG GCCAAAGCAC CACATCTTGT CGCTAACGAG CAGACGGTTA GACTTAACGC CACTGCGCTC GATCCGAATG GTGACGCGCT CTCCTACCAG TGGAGCCAGG TGATGGGGGC GTTCCCGGAT CCTGAAGTCA CAATCGAAAA TGCTGATGAA GCTGTTGCGA TGTTCACCGC GCCAGATGTC CCGGCTGCGA CTGAGTTGAC GTTCGACGTG GCAGTTACCG ACGATAGTGG TGCCACTACA CACGATACGG TCAACGTGAC TGTTGACCCA AATTATAGTC CACCGTCGGT TGACTTCACA TATACCCCAT CGAATCCCAC AGCAGATGAA ACAGTGTCGT TCAGTGAGAG CGCTTCCGAT CCGGATGGAT CGATCCAGTC TTACGACTGG CAATTCGGTG ACGGCAACAG TTCCAGTAGT ACCAATCCAA CACATACCTA CAGCAGTGCT GGAAGTTACA ATGTGTCGCT GACTGTCGCC GACGGCGACG GCAATACGAA CTCGACGACC AAACCACTTA GCGTCGAAGC GGACCAGTCT TTCTTGACGA TTGAGCAAGC GATCGACAAG AATAGTGACG GCCAGATAGG CGACTTTGAA GTCCTCACCG CGGTCGAATA TTGGCGCGCT GGCGAAACTG TGCCAAACAC GAATGGAAAG AAGATCAGTG ACAGCAAGAT CGCTGCTCTT CTCGAACACT GGCGCACGGG GACAGAGGTG TGA
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Protein sequence | MRTAGLVAVV LLGLCAGGAL VDGAVASDTS TTTDGTFDQG IALNETIESE LDAGDRFDEE MAGHHENYTF YAESGDVISA EMRPDGSNGH ATDAHAAQLR LYAPNGTEVF GSYNDVQGSA QLESVSLDAT GQYTLIATTN DIGAVGSYSD DVYDDETAAR TDTFEYQLRL YEGLGPDRAL NIGENITDSV SEADNYLDDQ AGYYDAYTFE GQTGQTISAE LRPNGSSGHA TAAHAAQLRL YAPNGTEVFG SYNDVQGSAQ LESVSLDATG QYTLIATTND IGAVGSYSDD VYDDETAART DTFEYQLRLY EGLGPDRALN IGENITDSVS EADNYLDDQA GYYDAYTFEG ERGKTLNFEM RVNQPTTKAA QLRLYAPNGT EVFGSYNDVQ GSAQLESVSL DATGQYTLIA TTNDIGAVGS YSDDVYDDET AARTDTFRYQ LRAYELGADA PVLTTGTSLT GALSVRDNYL DKTDGFFDLY HVSATSSSEL TATVIVDNPT DHAARVAVYD NDGSIVDRSY NNDGGGVTLD FSPDTTGGYY LAVTTEPDAS TYGSTRKGLR DTFRYQLTID GPENSPPIVT AKAPHLVANE QTVRLNATAL DPNGDALSYQ WSQVMGAFPD PEVTIENADE AVAMFTAPDV PAATELTFDV AVTDDSGATT HDTVNVTVDP NYSPPSVDFT YTPSNPTADE TVSFSESASD PDGSIQSYDW QFGDGNSSSS TNPTHTYSSA GSYNVSLTVA DGDGNTNSTT KPLSVEADQS FLTIEQAIDK NSDGQIGDFE VLTAVEYWRA GETVPNTNGK KISDSKIAAL LEHWRTGTEV
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