| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Huta_1013 |
|---|
| Symbol | |
|---|
| ID | 8383286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhabdus utahensis DSM 12940 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013158 |
|---|
| Strand | - |
|---|
| Start bp | 978073 |
|---|
| End bp | 979839 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644972077 |
|---|
| Product | helicase c2 |
|---|
| Protein accession | YP_003129929 |
|---|
| Protein GI | 257052096 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1199] Rad3-related DNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATCCCT CCCGTATCGA GTCGGCCTTC CCTGCGCCGT CCTACCGTGG CAACCAGGAG
GACGCCCTGC GTCGCATCCG GGCGGCGTTC GAGGCCGGCA ACGACGTCGT CCTCGTCCGC
GCGCCGACCG GCAGCGGCAA GTCTCTGCTC GCGCGAGCCA TCGCCGGGTG TGCCCGCCAG
GGCAGCCAGG CCAGCGCGAC CGACGCGATC GGGGCCTACT ACACCACCCC GCAGGTTTCC
CAACTCGACG ACGTGGCGGC CGACCCCCTA CTCGACGACC TCTCGATCAT CCGCGGGAAA
TCGAACTACA AGTGCATCCT CTCGGGGGAG ACTGATACCC CTGTCACCCA GGCACCCTGT
GCCCGGGAGC GGGAGTTCGA CTGCCAGGTC AAACACCGGT GTCCGTACTT CTCGGATCGA
TCGATCGCCG CCAACCAGTC GATCGCCGCG ATGACGCTCG CCTATTTCAT GCAAACCGCC
GGCTCGGACG TCTTCGGCAC GCGCGACGTG GTCGTCATCG ACGAGGCCCA CGGCCTGGGC
GAGTGGGCCG AGATGTACGC CGCGATCGAC CTCGCACCCG ATACGGTCCC CGTCTGGGAC
GCCCGTCCGC CCCCTGAGAT CGACGATGTC GAGACGGCTG CTGACTATGC CGCGGGGCTC
TCCCGGGTCT GTGATCGTCG GCTGACCGAC CTCCGCGCCC AGGTCGAACT CGAACCCGAG
GAGGCCGCCG AACGCGACCG GCTGGAGGAA CTCCGGTCGG ATCTGACGTG GTTCCAGGAG
GCCGTCCGCG ATCCGGACAG TCCGACGACG TGGGTCGTCG ATCAGCCCGA CGGCGAGGGA
GGTCGAACCA CGTTTAAACC CCTCAATCCC GAACGCTTTC TCTCGCATAC GGTCTGGGAT
CGTGGGAACA AGTTCGCGCT GCTCTCGGCG ACGATCCTCA ACAAGGACGC CTTCTGCGCG
AGCGCCGGTC TCGATCCCGG CCGCGTGGCG CTGGTCGACC TCGAACACAC CTTCCCCGTC
GAGAACCGAC CGCTAGTGGA CGTCACGCAG GGGAAGATGA CCTACGAGGA ACGCGATGCG
ACGATTCCGA AGGTCGCCGA GACGCTCGTC TCGTTGATGG CCCGTCATCC CGAAGAACCC
GGGCTGGTGC ACTGTCACTC CTACGCGATC CAGGATGCCC TTGCCGACGA ACTCGATGCG
CTCGGCGTCG GCGATCGGGT CCGCTCTCAC GACAGCGAGG ACCGCGACGG CCAACTCGCC
GCCTGGAAGC GCAGCGACGA CCCGACGGTC TTTCTCTCGG TGAAGATGGA AGAAGCCCTG
GATCTCGACG GTGATCTCTG TCGGTGGCAA CTGCTCTGCA AGGCTCCCTA CCCCAACACG
CGGGATTCAC GGGTCGCGCG TCGCCTGGAA GACGGCGACT GGGCGTGGTA CTACCGGAGT
GCGCTCCGGA CGGTGATTCA GGCTGCCGGG CGGATCGTCC GCTCGCCCGA GGATCACGGG
GTGACCTACC TCGCCGACGC GAGCCTGCTG GACCTCTTCG ATCGCGCCCG GACCGACATG
CCGGAGTGGT TCGCCGAGCA GGTCGACCGG ATGGAGCGCC CCGATCTCCC GGCGGCCGAT
CCTGACGCTG CGCTCGCTGG ACTGACCGAC GGCCGGTCGA ACGGCGGGAG CGGTCGGTCA
GGGTCGGGCG GCTCACGGCG ATCGCGCCGG TCCAGTTCCT CCCGGTCGCA ATCGAACCCC
GTCGCCGACG TCTGGGACAC GGAATAG
|
|---|
| Protein sequence | MDPSRIESAF PAPSYRGNQE DALRRIRAAF EAGNDVVLVR APTGSGKSLL ARAIAGCARQ
GSQASATDAI GAYYTTPQVS QLDDVAADPL LDDLSIIRGK SNYKCILSGE TDTPVTQAPC
AREREFDCQV KHRCPYFSDR SIAANQSIAA MTLAYFMQTA GSDVFGTRDV VVIDEAHGLG
EWAEMYAAID LAPDTVPVWD ARPPPEIDDV ETAADYAAGL SRVCDRRLTD LRAQVELEPE
EAAERDRLEE LRSDLTWFQE AVRDPDSPTT WVVDQPDGEG GRTTFKPLNP ERFLSHTVWD
RGNKFALLSA TILNKDAFCA SAGLDPGRVA LVDLEHTFPV ENRPLVDVTQ GKMTYEERDA
TIPKVAETLV SLMARHPEEP GLVHCHSYAI QDALADELDA LGVGDRVRSH DSEDRDGQLA
AWKRSDDPTV FLSVKMEEAL DLDGDLCRWQ LLCKAPYPNT RDSRVARRLE DGDWAWYYRS
ALRTVIQAAG RIVRSPEDHG VTYLADASLL DLFDRARTDM PEWFAEQVDR MERPDLPAAD
PDAALAGLTD GRSNGGSGRS GSGGSRRSRR SSSSRSQSNP VADVWDTE
|
|---|
| |